Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0867
         (719 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_42597| Best HMM Match : 7tm_1 (HMM E-Value=7.1e-22)                 29   5.0  
SB_4105| Best HMM Match : WAP (HMM E-Value=0.0002)                     28   6.6  
SB_45996| Best HMM Match : VWA (HMM E-Value=2.6e-12)                   28   8.8  
SB_30604| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.8  

>SB_42597| Best HMM Match : 7tm_1 (HMM E-Value=7.1e-22)
          Length = 347

 Score = 28.7 bits (61), Expect = 5.0
 Identities = 13/35 (37%), Positives = 19/35 (54%), Gaps = 1/35 (2%)
 Frame = -3

Query: 528 YCNNDIQSL-DHIFFSCSAFSLDRLVFIDRLLCIY 427
           YC   I  +    FFSCS+F +   + +DR L +Y
Sbjct: 99  YCYMSITMIVSSTFFSCSSFFVVTAIAVDRFLALY 133


>SB_4105| Best HMM Match : WAP (HMM E-Value=0.0002)
          Length = 428

 Score = 28.3 bits (60), Expect = 6.6
 Identities = 13/39 (33%), Positives = 19/39 (48%)
 Frame = -2

Query: 667 ISCSISGLRISLDRRFYTTICRLEIRSLPLQCSFVSNQC 551
           +SC  +G+ +S  + FY    R E R   + C   SN C
Sbjct: 126 VSCYYNGVTLSKGQIFYKGCHRCECRMEGINCEVGSNSC 164


>SB_45996| Best HMM Match : VWA (HMM E-Value=2.6e-12)
          Length = 595

 Score = 27.9 bits (59), Expect = 8.8
 Identities = 17/49 (34%), Positives = 22/49 (44%)
 Frame = -3

Query: 642 GSPLIGGFIQPSVALRLGHCRFNAHLFRINVLSSPVCNYCNNDIQSLDH 496
           G+   G   QPS  L    C    HLF+IN  +   C Y    I+S +H
Sbjct: 515 GAVFHGNLAQPSQNLIQSICY--PHLFKINKATKHGCKYEEQAIKSYEH 561


>SB_30604| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 132

 Score = 27.9 bits (59), Expect = 8.8
 Identities = 10/25 (40%), Positives = 15/25 (60%), Gaps = 1/25 (4%)
 Frame = -3

Query: 543 SPVCNYCNNDI-QSLDHIFFSCSAF 472
           +P C YC ++  + +DH F SC  F
Sbjct: 35  TPKCCYCKSEEDEDIDHFFLSCGKF 59


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,856,013
Number of Sequences: 59808
Number of extensions: 430131
Number of successful extensions: 741
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 684
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 741
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1913853903
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)