Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0867
         (719 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY525080-1|AAS13529.1|  362|Caenorhabditis elegans serine or cys...    30   1.9  
AC087794-5|AAM48555.1|  362|Caenorhabditis elegans Serpin protei...    30   1.9  
Z81491-17|CAO82030.1|  959|Caenorhabditis elegans Hypothetical p...    29   3.3  
Z81092-2|CAB03145.3|  959|Caenorhabditis elegans Hypothetical pr...    29   3.3  

>AY525080-1|AAS13529.1|  362|Caenorhabditis elegans serine or
           cysteine protease inhibitorprotein.
          Length = 362

 Score = 29.9 bits (64), Expect = 1.9
 Identities = 14/55 (25%), Positives = 30/55 (54%)
 Frame = -1

Query: 239 KI*KSLELGFNSKTRICHFTRIGKYIRLGFGLIEIFISGRNYKGLGFGLNDIFIS 75
           +I  +L  G   +  + HF+ + K ++ G   +E++++ + Y   GF +N  F+S
Sbjct: 49  QIRNTLLSGATDEQLVEHFSFVSKEVKNGTKGVEVYLANKVYLKKGFTVNPTFLS 103


>AC087794-5|AAM48555.1|  362|Caenorhabditis elegans Serpin protein 3
           protein.
          Length = 362

 Score = 29.9 bits (64), Expect = 1.9
 Identities = 14/55 (25%), Positives = 30/55 (54%)
 Frame = -1

Query: 239 KI*KSLELGFNSKTRICHFTRIGKYIRLGFGLIEIFISGRNYKGLGFGLNDIFIS 75
           +I  +L  G   +  + HF+ + K ++ G   +E++++ + Y   GF +N  F+S
Sbjct: 49  QIRNTLLSGATDEQLVEHFSFVSKEVKNGTKGVEVYLANKVYLKKGFTVNPTFLS 103


>Z81491-17|CAO82030.1|  959|Caenorhabditis elegans Hypothetical
            protein F58D12.3 protein.
          Length = 959

 Score = 29.1 bits (62), Expect = 3.3
 Identities = 16/47 (34%), Positives = 28/47 (59%), Gaps = 2/47 (4%)
 Frame = +2

Query: 329  YLQLLNL*IQKLA*NFLDFLII--ARVCGMSSTFPYIHSRRSINTNL 463
            YL  LNL +QKL  N+  F +I  A +  M+S   +++ ++ +N N+
Sbjct: 866  YLMTLNLIVQKLKGNYDTFKLILGANLPIMASKDEFVNGKQKVNPNI 912


>Z81092-2|CAB03145.3|  959|Caenorhabditis elegans Hypothetical protein
            F58D12.3 protein.
          Length = 959

 Score = 29.1 bits (62), Expect = 3.3
 Identities = 16/47 (34%), Positives = 28/47 (59%), Gaps = 2/47 (4%)
 Frame = +2

Query: 329  YLQLLNL*IQKLA*NFLDFLII--ARVCGMSSTFPYIHSRRSINTNL 463
            YL  LNL +QKL  N+  F +I  A +  M+S   +++ ++ +N N+
Sbjct: 866  YLMTLNLIVQKLKGNYDTFKLILGANLPIMASKDEFVNGKQKVNPNI 912


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,037,820
Number of Sequences: 27780
Number of extensions: 336425
Number of successful extensions: 709
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 694
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 709
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1687292480
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)