Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0867
         (719 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor p...    24   1.7  
EF032397-1|ABM97933.1|  200|Apis mellifera arginine kinase protein.    22   6.7  
AF023619-1|AAC39040.1|  355|Apis mellifera arginine kinase protein.    22   6.7  

>AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor
           protein.
          Length = 587

 Score = 23.8 bits (49), Expect = 1.7
 Identities = 6/14 (42%), Positives = 10/14 (71%)
 Frame = -3

Query: 192 LPFYKDWKIYKTWL 151
           LPF   W+++K W+
Sbjct: 119 LPFSATWEVFKVWI 132


>EF032397-1|ABM97933.1|  200|Apis mellifera arginine kinase protein.
          Length = 200

 Score = 21.8 bits (44), Expect = 6.7
 Identities = 12/32 (37%), Positives = 17/32 (53%)
 Frame = +2

Query: 464 SSEKAEQLKKM*SRDCISLLQ*LQTGEDKTLI 559
           SS+    LKK  S+D    L+  +T  D TL+
Sbjct: 3   SSDSKSLLKKYLSKDVFDQLKTKKTSFDSTLL 34


>AF023619-1|AAC39040.1|  355|Apis mellifera arginine kinase protein.
          Length = 355

 Score = 21.8 bits (44), Expect = 6.7
 Identities = 12/32 (37%), Positives = 17/32 (53%)
 Frame = +2

Query: 464 SSEKAEQLKKM*SRDCISLLQ*LQTGEDKTLI 559
           SS+    LKK  S+D    L+  +T  D TL+
Sbjct: 19  SSDSKSLLKKYLSKDVFDQLKTKKTSFDSTLL 50


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 198,993
Number of Sequences: 438
Number of extensions: 4469
Number of successful extensions: 5
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 22292145
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)