Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brS-0867
(719 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g47783.1 68414.m05315 hypothetical protein 33 0.19
At1g54955.1 68414.m06276 hypothetical protein 31 0.58
At2g17590.1 68415.m02035 DC1 domain-containing protein contains ... 31 0.77
At4g11710.1 68417.m01869 hypothetical protein 30 1.3
At1g35570.1 68414.m04416 hypothetical protein 29 2.3
At4g05145.1 68417.m00771 hypothetical protein 29 3.1
At1g19030.1 68414.m02369 hypothetical protein 29 4.1
At5g53480.1 68418.m06646 importin beta-2, putative similar to im... 28 5.4
At4g23250.1 68417.m03352 protein kinase family protein contains ... 28 5.4
At3g17920.1 68416.m02282 leucine-rich repeat family protein cont... 28 5.4
At2g02650.1 68415.m00204 reverse transcriptase-related similar t... 28 5.4
At2g02520.1 68415.m00192 hypothetical protein 28 5.4
At1g13800.1 68414.m01620 pentatricopeptide (PPR) repeat-containi... 28 5.4
At1g43730.1 68414.m05028 hypothetical protein 27 9.5
At1g32390.1 68414.m03996 hypothetical protein 27 9.5
At1g04160.1 68414.m00406 myosin family protein contains Pfam pro... 27 9.5
>At1g47783.1 68414.m05315 hypothetical protein
Length = 137
Score = 33.1 bits (72), Expect = 0.19
Identities = 10/19 (52%), Positives = 15/19 (78%)
Frame = -3
Query: 534 CNYCNNDIQSLDHIFFSCS 478
C +C+ I++ DH+FFSCS
Sbjct: 12 CTFCSTSIETRDHLFFSCS 30
>At1g54955.1 68414.m06276 hypothetical protein
Length = 137
Score = 31.5 bits (68), Expect = 0.58
Identities = 10/18 (55%), Positives = 15/18 (83%)
Frame = -3
Query: 534 CNYCNNDIQSLDHIFFSC 481
C C+N+I++ DH+FFSC
Sbjct: 12 CVLCDNNIETRDHLFFSC 29
>At2g17590.1 68415.m02035 DC1 domain-containing protein contains
Pfam profile PF03107: DC1 domain
Length = 632
Score = 31.1 bits (67), Expect = 0.77
Identities = 14/26 (53%), Positives = 18/26 (69%), Gaps = 2/26 (7%)
Frame = -3
Query: 534 CNYCNNDIQSLDHIFFSCSA--FSLD 463
CN+C ND++S D F+ CS FSLD
Sbjct: 137 CNWCGNDLRSFD-FFYRCSICNFSLD 161
>At4g11710.1 68417.m01869 hypothetical protein
Length = 473
Score = 30.3 bits (65), Expect = 1.3
Identities = 10/18 (55%), Positives = 13/18 (72%)
Frame = -3
Query: 534 CNYCNNDIQSLDHIFFSC 481
C CN ++S DH+FFSC
Sbjct: 347 CILCNKALESRDHLFFSC 364
>At1g35570.1 68414.m04416 hypothetical protein
Length = 236
Score = 29.5 bits (63), Expect = 2.3
Identities = 11/26 (42%), Positives = 16/26 (61%)
Frame = -3
Query: 543 SPVCNYCNNDIQSLDHIFFSCSAFSL 466
S C C+N ++ DH+FFSC S+
Sbjct: 141 SAACVLCHNAPETRDHLFFSCDFASI 166
>At4g05145.1 68417.m00771 hypothetical protein
Length = 219
Score = 29.1 bits (62), Expect = 3.1
Identities = 8/19 (42%), Positives = 14/19 (73%)
Frame = -3
Query: 534 CNYCNNDIQSLDHIFFSCS 478
C +C +++ DH+FF+CS
Sbjct: 94 CIFCQGTLETRDHLFFTCS 112
>At1g19030.1 68414.m02369 hypothetical protein
Length = 398
Score = 28.7 bits (61), Expect = 4.1
Identities = 10/29 (34%), Positives = 17/29 (58%)
Frame = -3
Query: 567 LFRINVLSSPVCNYCNNDIQSLDHIFFSC 481
L + N +P C C + +++ DH+FF C
Sbjct: 316 LIKWNPQVTPNCILCQHTLETWDHLFFMC 344
>At5g53480.1 68418.m06646 importin beta-2, putative similar to
importin-beta2 [Oryza sativa (japonica cultivar-group)]
GI:3983665; contains Pfam profile PF03810: Importin-beta
N-terminal domain
Length = 870
Score = 28.3 bits (60), Expect = 5.4
Identities = 12/30 (40%), Positives = 19/30 (63%)
Frame = -3
Query: 363 NF*IYRFNSWRYLKMGLQGFDEVMAPSITL 274
NF Y ++YL+MGLQ F+E ++T+
Sbjct: 640 NFAKYMPEFYKYLEMGLQNFEEYQVCAVTV 669
>At4g23250.1 68417.m03352 protein kinase family protein contains
Pfam domain PF00069: Protein kinase domain
Length = 998
Score = 28.3 bits (60), Expect = 5.4
Identities = 15/46 (32%), Positives = 19/46 (41%)
Frame = -2
Query: 673 VPISCSISGLRISLDRRFYTTICRLEIRSLPLQCSFVSNQCFVFSS 536
VP S S+D T R R + +QC F + CF SS
Sbjct: 643 VPGQSSSKSFTSSVDEATITQRRRKSYREIDIQCEFCCSMCFSISS 688
>At3g17920.1 68416.m02282 leucine-rich repeat family protein
contains leucine rich repeat (LRR) domains, Pfam:PF00560
Length = 962
Score = 28.3 bits (60), Expect = 5.4
Identities = 10/22 (45%), Positives = 15/22 (68%)
Frame = -1
Query: 230 KSLELGFNSKTRICHFTRIGKY 165
K L+LGFN +I H + +GK+
Sbjct: 216 KHLDLGFNQLRKISHLSEVGKF 237
>At2g02650.1 68415.m00204 reverse transcriptase-related similar to
reverse transcriptase [Arabidopsis thaliana] GI:976278
Length = 365
Score = 28.3 bits (60), Expect = 5.4
Identities = 10/32 (31%), Positives = 18/32 (56%)
Frame = -3
Query: 576 NAHLFRINVLSSPVCNYCNNDIQSLDHIFFSC 481
N L N+ + P+C C + +++ HI F+C
Sbjct: 61 NTRLRSRNIDADPICQRCCIEEETIHHIMFNC 92
>At2g02520.1 68415.m00192 hypothetical protein
Length = 211
Score = 28.3 bits (60), Expect = 5.4
Identities = 8/20 (40%), Positives = 13/20 (65%)
Frame = -3
Query: 540 PVCNYCNNDIQSLDHIFFSC 481
P+C +CN ++ H+FF C
Sbjct: 83 PLCLFCNTHDETRQHLFFDC 102
>At1g13800.1 68414.m01620 pentatricopeptide (PPR) repeat-containing
protein contains Pfam profile PF01535: PPR repeat
Length = 883
Score = 28.3 bits (60), Expect = 5.4
Identities = 9/27 (33%), Positives = 17/27 (62%)
Frame = +1
Query: 151 KPSLIYFPILVKWQIRVLLLNPSSRLF 231
KP + Y+ +L+ WQ ++ L + R+F
Sbjct: 758 KPDVFYYTVLIDWQCKIGDLGEAKRIF 784
>At1g43730.1 68414.m05028 hypothetical protein
Length = 320
Score = 27.5 bits (58), Expect = 9.5
Identities = 22/78 (28%), Positives = 36/78 (46%)
Frame = -3
Query: 714 PSSHLEVTKYFQIMYQSHVPYLGSGSPLIGGFIQPSVALRLGHCRFNAHLFRINVLSSPV 535
P +H+ V Y + +++HVP FI VA H R + +++ + V
Sbjct: 144 PQNHI-VPWYKAVWFKNHVPK--------HAFICWVVAWNRLHTRDRLRSWGLSIPA--V 192
Query: 534 CNYCNNDIQSLDHIFFSC 481
C CN+ +S H+FF C
Sbjct: 193 CLLCNSHDESRAHLFFEC 210
>At1g32390.1 68414.m03996 hypothetical protein
Length = 192
Score = 27.5 bits (58), Expect = 9.5
Identities = 7/18 (38%), Positives = 14/18 (77%)
Frame = -3
Query: 534 CNYCNNDIQSLDHIFFSC 481
C +C++ +++ DH+FF C
Sbjct: 107 CVFCSSPMETRDHLFFQC 124
>At1g04160.1 68414.m00406 myosin family protein contains Pfam
profiles: PF02736 myosin N-terminal SH3-like domain,
PF00063 myosin head (motor domain), PF00612 IQ
calmodulin-binding motif, PF01843: DIL domain
Length = 1500
Score = 27.5 bits (58), Expect = 9.5
Identities = 15/31 (48%), Positives = 19/31 (61%)
Frame = -2
Query: 382 IKKVLSQFLNL*IQQLEISKNGITRI*RSYG 290
+KK LS +++ IQ ISK GI R RS G
Sbjct: 1259 LKKELSALISMCIQAPRISKGGIQRSARSLG 1289
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,110,708
Number of Sequences: 28952
Number of extensions: 312461
Number of successful extensions: 692
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 677
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 692
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1565336320
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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