Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0865
         (408 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC651.09c |||RNA polymerase II associated Paf1 complex |Schizo...    28   0.64 
SPAC56E4.06c |ggt2||gamma-glutamyltranspeptidase Ggt2|Schizosacc...    27   1.5  
SPCC1223.11 |ptc2||protein phosphatase 2C Ptc2 |Schizosaccharomy...    25   4.5  
SPAC17A5.15c |||glutamate-tRNA ligase |Schizosaccharomyces pombe...    25   4.5  
SPBP35G2.10 |mit1||SHREC complex subunit Mit1|Schizosaccharomyce...    25   6.0  
SPAC13G6.10c |||O-glucosyl hydrolase |Schizosaccharomyces pombe|...    25   6.0  
SPAC4A8.13c |pts1||20S proteasome component beta 5|Schizosacchar...    24   7.9  
SPCC285.16c |msh6||MutS protein homolog|Schizosaccharomyces pomb...    24   7.9  
SPAC57A7.05 |||conserved protein |Schizosaccharomyces pombe|chr ...    24   7.9  
SPCC16C4.08c |skb15||Shk1 kinase binding protein 15|Schizosaccha...    24   7.9  

>SPBC651.09c |||RNA polymerase II associated Paf1 complex
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 560

 Score = 27.9 bits (59), Expect = 0.64
 Identities = 11/21 (52%), Positives = 14/21 (66%)
 Frame = +2

Query: 284 TSPRPSPSSKASLYLTPSTDP 346
           TSP+PSPS   S+  TP  +P
Sbjct: 469 TSPQPSPSLSTSIMSTPKLNP 489


>SPAC56E4.06c |ggt2||gamma-glutamyltranspeptidase
           Ggt2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 611

 Score = 26.6 bits (56), Expect = 1.5
 Identities = 10/24 (41%), Positives = 15/24 (62%)
 Frame = -3

Query: 109 QLCFLSSSSHWQPLLLPAGKLSRA 38
           ++  L     WQP+L+P GK+ RA
Sbjct: 223 EMAHLLKDPIWQPILMPNGKVLRA 246


>SPCC1223.11 |ptc2||protein phosphatase 2C Ptc2 |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 370

 Score = 25.0 bits (52), Expect = 4.5
 Identities = 12/36 (33%), Positives = 19/36 (52%), Gaps = 2/36 (5%)
 Frame = +1

Query: 160 GYGIDGLDVGYIG--HGQGLGGAYNYVDGGYSSGYG 261
           G G D + +  +   HG+GL   YN++    +SG G
Sbjct: 278 GIGCDNMTICIVAFLHGRGLEDWYNWITQRVNSGEG 313


>SPAC17A5.15c |||glutamate-tRNA ligase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 716

 Score = 25.0 bits (52), Expect = 4.5
 Identities = 12/21 (57%), Positives = 13/21 (61%)
 Frame = +1

Query: 283 DVTKTITLVKGVPVPYAVDRP 345
           DV K  T+V G   PYA DRP
Sbjct: 523 DVVKA-TIVNGPAAPYAEDRP 542


>SPBP35G2.10 |mit1||SHREC complex subunit Mit1|Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 1418

 Score = 24.6 bits (51), Expect = 6.0
 Identities = 7/19 (36%), Positives = 14/19 (73%)
 Frame = -3

Query: 133  CPISSLGVQLCFLSSSSHW 77
            CP+S + +++CFL  + H+
Sbjct: 1323 CPLSIVPLEICFLCGTPHF 1341


>SPAC13G6.10c |||O-glucosyl hydrolase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 530

 Score = 24.6 bits (51), Expect = 6.0
 Identities = 14/36 (38%), Positives = 20/36 (55%), Gaps = 2/36 (5%)
 Frame = +1

Query: 169 IDGLDVGYIGH--GQGLGGAYNYVDGGYSSGYGLNF 270
           I G D+GY  +   +G+   YN+  G YSSG   +F
Sbjct: 302 IPGTDLGYSDNFVNKGINWYYNW--GSYSSGLSSSF 335


>SPAC4A8.13c |pts1||20S proteasome component beta
           5|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 272

 Score = 24.2 bits (50), Expect = 7.9
 Identities = 14/33 (42%), Positives = 18/33 (54%), Gaps = 1/33 (3%)
 Frame = +1

Query: 142 LLNLGYGYGIDGLDVGYIGHGQGLGG-AYNYVD 237
           L N+ Y Y   GL +G +  G G GG A  Y+D
Sbjct: 144 LSNITYSYKGYGLSMGTMLAGTGKGGTALYYID 176


>SPCC285.16c |msh6||MutS protein homolog|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1254

 Score = 24.2 bits (50), Expect = 7.9
 Identities = 13/36 (36%), Positives = 21/36 (58%), Gaps = 4/36 (11%)
 Frame = +2

Query: 275 DIPTSPRPSPS----SKASLYLTPSTDPFHTQLRST 370
           ++PTSP    +    S +S+   PS+DPF + L S+
Sbjct: 76  ELPTSPSHHANTEIDSSSSMLPPPSSDPFSSPLSSS 111


>SPAC57A7.05 |||conserved protein |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1337

 Score = 24.2 bits (50), Expect = 7.9
 Identities = 9/17 (52%), Positives = 11/17 (64%)
 Frame = +1

Query: 175  GLDVGYIGHGQGLGGAY 225
            G+ + Y G G GLG AY
Sbjct: 985  GMVIWYTGSGHGLGNAY 1001


>SPCC16C4.08c |skb15||Shk1 kinase binding protein
           15|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 341

 Score = 24.2 bits (50), Expect = 7.9
 Identities = 10/24 (41%), Positives = 15/24 (62%)
 Frame = -3

Query: 154 RGSGDHVCPISSLGVQLCFLSSSS 83
           RG G  V P+S++   + FL+ SS
Sbjct: 151 RGKGGKVLPLSTIPESILFLNESS 174


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,356,766
Number of Sequences: 5004
Number of extensions: 25588
Number of successful extensions: 116
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 94
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 116
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 140222766
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)