Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0865
         (408 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced prot...    22   2.3  
EF625898-1|ABR45905.1|  686|Apis mellifera hexamerin protein.          22   3.1  
EF589162-1|ABQ84439.1|  686|Apis mellifera hexamerin 70c protein.      22   3.1  
AB022907-1|BAA86908.1|  615|Apis mellifera glucose oxidase protein.    21   5.4  
EF540769-1|ABQ14707.1|  620|Apis mellifera adenosine deaminase p...    21   7.1  
AF004169-1|AAC13418.1|  371|Apis mellifera ultraviolet-sensitive...    21   7.1  

>AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced protein
           75 protein.
          Length = 900

 Score = 22.2 bits (45), Expect = 2.3
 Identities = 9/16 (56%), Positives = 13/16 (81%)
 Frame = +2

Query: 284 TSPRPSPSSKASLYLT 331
           TSPRP+ S+ A+L L+
Sbjct: 840 TSPRPASSTAATLVLS 855


>EF625898-1|ABR45905.1|  686|Apis mellifera hexamerin protein.
          Length = 686

 Score = 21.8 bits (44), Expect = 3.1
 Identities = 5/16 (31%), Positives = 10/16 (62%)
 Frame = -1

Query: 357 WVWNGSVDGVRYRDAF 310
           W WN ++  + ++D F
Sbjct: 659 WAWNFTIPNMYFKDVF 674


>EF589162-1|ABQ84439.1|  686|Apis mellifera hexamerin 70c protein.
          Length = 686

 Score = 21.8 bits (44), Expect = 3.1
 Identities = 5/16 (31%), Positives = 10/16 (62%)
 Frame = -1

Query: 357 WVWNGSVDGVRYRDAF 310
           W WN ++  + ++D F
Sbjct: 659 WAWNFTIPNMYFKDVF 674


>AB022907-1|BAA86908.1|  615|Apis mellifera glucose oxidase protein.
          Length = 615

 Score = 21.0 bits (42), Expect = 5.4
 Identities = 9/15 (60%), Positives = 11/15 (73%)
 Frame = -3

Query: 97  LSSSSHWQPLLLPAG 53
           LS  S+W+ LLL AG
Sbjct: 87  LSEVSNWKVLLLEAG 101


>EF540769-1|ABQ14707.1|  620|Apis mellifera adenosine deaminase
           protein.
          Length = 620

 Score = 20.6 bits (41), Expect = 7.1
 Identities = 5/14 (35%), Positives = 12/14 (85%)
 Frame = +1

Query: 307 VKGVPVPYAVDRPV 348
           ++G+P PY +++P+
Sbjct: 487 IQGLPPPYRLNKPL 500


>AF004169-1|AAC13418.1|  371|Apis mellifera ultraviolet-sensitive
          opsin protein.
          Length = 371

 Score = 20.6 bits (41), Expect = 7.1
 Identities = 7/14 (50%), Positives = 9/14 (64%)
 Frame = -3

Query: 94 SSSSHWQPLLLPAG 53
          + S HW+   LPAG
Sbjct: 3  NDSIHWEARYLPAG 16


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 90,478
Number of Sequences: 438
Number of extensions: 1879
Number of successful extensions: 6
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 52
effective length of database: 123,567
effective search space used: 10256061
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)