Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0862
         (700 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q4XWW7 Cluster: Putative uncharacterized protein; n=1; ...    33   5.1  
UniRef50_Q7GI75 Cluster: ORF256; n=12; Triticeae|Rep: ORF256 - T...    33   6.7  
UniRef50_Q4Y6B1 Cluster: Putative uncharacterized protein; n=1; ...    33   8.9  

>UniRef50_Q4XWW7 Cluster: Putative uncharacterized protein; n=1;
           Plasmodium chabaudi|Rep: Putative uncharacterized
           protein - Plasmodium chabaudi
          Length = 205

 Score = 33.5 bits (73), Expect = 5.1
 Identities = 20/56 (35%), Positives = 31/56 (55%)
 Frame = +3

Query: 414 LLLCMFFFLCRQHQGLCIFYNFFPTYLLVDFSSYARAGR*AHGFNLREFVKFVKTS 581
           LL+C+FFF C  H    IF N FP +L +  SS+      ++ +N+R  +   +TS
Sbjct: 19  LLICVFFFSCSTH----IFKNVFP-FLFMLTSSHENNSNNSNEYNVRANINSNQTS 69


>UniRef50_Q7GI75 Cluster: ORF256; n=12; Triticeae|Rep: ORF256 -
           Triticum timopheevi (Sanduri wheat)
          Length = 256

 Score = 33.1 bits (72), Expect = 6.7
 Identities = 18/43 (41%), Positives = 24/43 (55%)
 Frame = +1

Query: 367 FYLCFSLLFQYFMLILCYSACFFFYVVNTKAYVSFTIFSLPIC 495
           FYL F + F Y    L +S C FF++V    ++S  I  LPIC
Sbjct: 17  FYLHFCIKFPYIYDFLLFSICLFFFLVR---FIS--IILLPIC 54


>UniRef50_Q4Y6B1 Cluster: Putative uncharacterized protein; n=1;
           Plasmodium chabaudi|Rep: Putative uncharacterized
           protein - Plasmodium chabaudi
          Length = 121

 Score = 32.7 bits (71), Expect = 8.9
 Identities = 20/44 (45%), Positives = 23/44 (52%), Gaps = 1/44 (2%)
 Frame = +1

Query: 364 FFYLC-FSLLFQYFMLILCYSACFFFYVVNTKAYVSFTIFSLPI 492
           F YL  F LLF Y++ I+C       Y   TK  V FT FSL I
Sbjct: 49  FPYLAIFCLLFAYYLFIICLCILIIVYRYGTKLIVCFT-FSLLI 91


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 604,790,914
Number of Sequences: 1657284
Number of extensions: 10858994
Number of successful extensions: 24628
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 23319
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 24547
length of database: 575,637,011
effective HSP length: 98
effective length of database: 413,223,179
effective search space used: 55371905986
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)