Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0862
         (700 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM292340-1|CAL23152.1|  355|Tribolium castaneum gustatory recept...    30   0.016
AM292378-1|CAL23190.2|  387|Tribolium castaneum gustatory recept...    26   0.26 
AM292374-1|CAL23186.2|  659|Tribolium castaneum gustatory recept...    24   1.0  
AM292356-1|CAL23168.2|  251|Tribolium castaneum gustatory recept...    24   1.4  
EF222290-1|ABN79650.1|  378|Tribolium castaneum adipokinetic hor...    23   2.4  
DQ422965-1|ABE02225.1|  378|Tribolium castaneum adipokinetic hor...    23   2.4  
AM292367-1|CAL23179.2| 1451|Tribolium castaneum gustatory recept...    23   2.4  
S78567-1|AAB34900.1|  141|Tribolium castaneum GABA receptor subu...    22   4.2  
AF025669-1|AAB81523.1|  243|Tribolium castaneum GABA receptor su...    22   4.2  
DQ372925-1|ABD17350.1|  596|Tribolium castaneum telomerase rever...    21   7.3  

>AM292340-1|CAL23152.1|  355|Tribolium castaneum gustatory receptor
           candidate 19 protein.
          Length = 355

 Score = 30.3 bits (65), Expect = 0.016
 Identities = 23/59 (38%), Positives = 33/59 (55%), Gaps = 6/59 (10%)
 Frame = +3

Query: 357 WLILLFVL*SFIPIFYVNTL-LLCMFFFLCRQHQGLCIFY-----NFFPTYLLVDFSSY 515
           ++ LLF   +FI IF ++ L LLC+++F C     LCI+Y       FPT+    FS Y
Sbjct: 263 YMHLLFCC-AFI-IFTMHLLFLLCIYYFYCALIILLCIYYFCRAFIIFPTHFYCAFSLY 319



 Score = 27.9 bits (59), Expect = 0.084
 Identities = 16/47 (34%), Positives = 24/47 (51%), Gaps = 2/47 (4%)
 Frame = +1

Query: 361 LFF--YLCFSLLFQYFMLILCYSACFFFYVVNTKAYVSFTIFSLPIC 495
           +FF  +L F L   YF L L +  C +++     A++ FTI  L  C
Sbjct: 187 IFFNMHLLFLLCLDYFTLHLLFLPCIYYFY---SAFIIFTIHLLFYC 230



 Score = 26.6 bits (56), Expect = 0.19
 Identities = 10/41 (24%), Positives = 23/41 (56%)
 Frame = +1

Query: 364 FFYLCFSLLFQYFMLILCYSACFFFYVVNTKAYVSFTIFSL 486
           +FY  F L   + +L++C    ++ +++   A++ FT+  L
Sbjct: 240 YFYYAFILFTVHLLLLVCIYYFYYMHLLFCCAFIIFTMHLL 280



 Score = 25.4 bits (53), Expect = 0.45
 Identities = 11/42 (26%), Positives = 22/42 (52%)
 Frame = +1

Query: 361 LFFYLCFSLLFQYFMLILCYSACFFFYVVNTKAYVSFTIFSL 486
           ++++ C S+ F   +L L    C  ++ V+   Y  F IF++
Sbjct: 56  IYYFYCVSITFNVHLLFL---LCSGYFTVHLLFYCPFIIFTV 94



 Score = 25.0 bits (52), Expect = 0.59
 Identities = 13/35 (37%), Positives = 23/35 (65%), Gaps = 1/35 (2%)
 Frame = +3

Query: 396 IFYVNTL-LLCMFFFLCRQHQGLCIFYNFFPTYLL 497
           IF V+ L LLC+++F+      LCI+Y F+  +++
Sbjct: 122 IFTVHLLFLLCIYYFVVPLFFLLCIYY-FYCAFII 155



 Score = 23.8 bits (49), Expect = 1.4
 Identities = 11/39 (28%), Positives = 21/39 (53%)
 Frame = +1

Query: 370 YLCFSLLFQYFMLILCYSACFFFYVVNTKAYVSFTIFSL 486
           +L F L   YF++ L +  C +++     A++ FT+  L
Sbjct: 126 HLLFLLCIYYFVVPLFFLLCIYYFYC---AFIIFTVHLL 161



 Score = 22.2 bits (45), Expect = 4.2
 Identities = 7/29 (24%), Positives = 16/29 (55%)
 Frame = +1

Query: 367 FYLCFSLLFQYFMLILCYSACFFFYVVNT 453
           F LC    +  F+++LC    ++ +++ T
Sbjct: 96  FLLCTYYFYYAFIILLCVYYFYYAFIIFT 124



 Score = 21.4 bits (43), Expect = 7.3
 Identities = 9/25 (36%), Positives = 14/25 (56%)
 Frame = +2

Query: 362 YSFICALVFYSNILC*YFVTLHVFF 436
           Y+FI   V    +LC Y+  + +FF
Sbjct: 118 YAFIIFTVHLLFLLCIYYFVVPLFF 142



 Score = 21.0 bits (42), Expect = 9.7
 Identities = 7/30 (23%), Positives = 15/30 (50%)
 Frame = +1

Query: 364 FFYLCFSLLFQYFMLILCYSACFFFYVVNT 453
           +FY  F +   + + +LC    F  +++ T
Sbjct: 148 YFYCAFIIFTVHLLFLLCIYHFFCAFIIFT 177


>AM292378-1|CAL23190.2|  387|Tribolium castaneum gustatory receptor
           candidate 57 protein.
          Length = 387

 Score = 26.2 bits (55), Expect = 0.26
 Identities = 10/26 (38%), Positives = 16/26 (61%)
 Frame = +3

Query: 78  YRYYTAIFFFYLMCNTYMILL*HLLL 155
           ++YY    F Y +CNT + L+ H +L
Sbjct: 144 FQYYIGRSFTYYVCNTTIFLIFHSVL 169


>AM292374-1|CAL23186.2|  659|Tribolium castaneum gustatory receptor
           candidate 53 protein.
          Length = 659

 Score = 24.2 bits (50), Expect = 1.0
 Identities = 12/32 (37%), Positives = 20/32 (62%)
 Frame = +1

Query: 403 MLILCYSACFFFYVVNTKAYVSFTIFSLPICW 498
           +L+L +++ F F VV+   Y+S  + S PI W
Sbjct: 236 ILLLMFTSHFIFIVVSI-FYMSAYLISNPIMW 266


>AM292356-1|CAL23168.2|  251|Tribolium castaneum gustatory receptor
           candidate 35 protein.
          Length = 251

 Score = 23.8 bits (49), Expect = 1.4
 Identities = 9/16 (56%), Positives = 11/16 (68%)
 Frame = +3

Query: 468 FYNFFPTYLLVDFSSY 515
           F NF  TYL+ DF +Y
Sbjct: 34  FENFVKTYLVSDFENY 49


>EF222290-1|ABN79650.1|  378|Tribolium castaneum adipokinetic
           hormone receptor protein.
          Length = 378

 Score = 23.0 bits (47), Expect = 2.4
 Identities = 7/10 (70%), Positives = 8/10 (80%)
 Frame = +3

Query: 462 CIFYNFFPTY 491
           C+ YN FPTY
Sbjct: 204 CVTYNVFPTY 213


>DQ422965-1|ABE02225.1|  378|Tribolium castaneum adipokinetic
           hormone receptor protein.
          Length = 378

 Score = 23.0 bits (47), Expect = 2.4
 Identities = 7/10 (70%), Positives = 8/10 (80%)
 Frame = +3

Query: 462 CIFYNFFPTY 491
           C+ YN FPTY
Sbjct: 204 CVTYNVFPTY 213


>AM292367-1|CAL23179.2| 1451|Tribolium castaneum gustatory receptor
            candidate 46 protein.
          Length = 1451

 Score = 23.0 bits (47), Expect = 2.4
 Identities = 9/21 (42%), Positives = 13/21 (61%)
 Frame = +3

Query: 408  NTLLLCMFFFLCRQHQGLCIF 470
            N LL C++ FLC    G C++
Sbjct: 1126 NVLLNCVYLFLC----GFCVY 1142


>S78567-1|AAB34900.1|  141|Tribolium castaneum GABA receptor subunit
           protein.
          Length = 141

 Score = 22.2 bits (45), Expect = 4.2
 Identities = 9/29 (31%), Positives = 14/29 (48%)
 Frame = +3

Query: 540 GFNLREFVKFVKTSPNKTSISQNLSLPFF 626
           G+ +R+        PN   +S  +SLP F
Sbjct: 7   GYTMRDIRYKWNEGPNSVGVSNEVSLPQF 35


>AF025669-1|AAB81523.1|  243|Tribolium castaneum GABA receptor
           subunit protein.
          Length = 243

 Score = 22.2 bits (45), Expect = 4.2
 Identities = 9/29 (31%), Positives = 14/29 (48%)
 Frame = +3

Query: 540 GFNLREFVKFVKTSPNKTSISQNLSLPFF 626
           G+ +R+        PN   +S  +SLP F
Sbjct: 189 GYTMRDIRYKWNEGPNSVGVSSEVSLPQF 217


>DQ372925-1|ABD17350.1|  596|Tribolium castaneum telomerase reverse
           transcriptase protein.
          Length = 596

 Score = 21.4 bits (43), Expect = 7.3
 Identities = 8/37 (21%), Positives = 16/37 (43%)
 Frame = +3

Query: 537 HGFNLREFVKFVKTSPNKTSISQNLSLPFFCNRYSQW 647
           H F L  F   +        + + +  PF CN ++++
Sbjct: 415 HKFKLWNFNNQISDDNPARFLQKAMDFPFICNSFTKF 451


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 159,650
Number of Sequences: 336
Number of extensions: 3599
Number of successful extensions: 18
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 18
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 18426585
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)