Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0862
         (700 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_04_0237 + 23831949-23832354,23833970-23835166,23835274-238354...    29   2.7  
05_03_0074 + 8095355-8096575,8096664-8096901,8096990-8097667,809...    28   6.2  
05_03_0071 - 8044217-8045142,8045303-8045411,8045634-8046854           28   6.2  
04_01_0511 + 6678765-6678801,6678904-6679923,6680012-6680718           28   6.2  
02_05_1115 - 34225793-34225843,34225998-34226072,34226861-342268...    28   8.2  

>04_04_0237 +
           23831949-23832354,23833970-23835166,23835274-23835453,
           23835537-23835823,23835912-23836029,23836354-23836483,
           23836693-23836861,23836926-23836991,23837466-23837738,
           23838131-23838349
          Length = 1014

 Score = 29.5 bits (63), Expect = 2.7
 Identities = 11/30 (36%), Positives = 17/30 (56%)
 Frame = +2

Query: 350 IRLAYSFICALVFYSNILC*YFVTLHVFFS 439
           IRLAY + C     S ++   +V +H+F S
Sbjct: 456 IRLAYKYFCNFTVISTVIMALYVLVHIFLS 485


>05_03_0074 +
           8095355-8096575,8096664-8096901,8096990-8097667,
           8097787-8097974
          Length = 774

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 21/65 (32%), Positives = 31/65 (47%)
 Frame = +3

Query: 444 RQHQGLCIFYNFFPTYLLVDFSSYARAGR*AHGFNLREFVKFVKTSPNKTSISQNLSLPF 623
           RQ Q L   ++   T LL   +S++ A +    FN+   VK  K  P+   + +   LPF
Sbjct: 645 RQLQELNNRFDEVNTELLRCMASFSPA-KSFSAFNVDNLVKLAKFYPSDFDVEEMNQLPF 703

Query: 624 FCNRY 638
             NRY
Sbjct: 704 QLNRY 708


>05_03_0071 - 8044217-8045142,8045303-8045411,8045634-8046854
          Length = 751

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 21/65 (32%), Positives = 31/65 (47%)
 Frame = +3

Query: 444 RQHQGLCIFYNFFPTYLLVDFSSYARAGR*AHGFNLREFVKFVKTSPNKTSISQNLSLPF 623
           RQ Q L   ++   T LL   +S++ A +    FN+   VK  K  P+   + +   LPF
Sbjct: 578 RQLQELNNRFDEVNTELLRCMASFSPA-KSFSAFNVDNLVKLAKFYPSDFDVEEMNQLPF 636

Query: 624 FCNRY 638
             NRY
Sbjct: 637 QLNRY 641


>04_01_0511 + 6678765-6678801,6678904-6679923,6680012-6680718
          Length = 587

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 21/65 (32%), Positives = 31/65 (47%)
 Frame = +3

Query: 444 RQHQGLCIFYNFFPTYLLVDFSSYARAGR*AHGFNLREFVKFVKTSPNKTSISQNLSLPF 623
           RQ Q L   ++   T LL   +S++ A +    FN+   VK  K  P+   + +   LPF
Sbjct: 511 RQLQELNNRFDEVNTELLRCMASFSPA-KSFSAFNVDNLVKLAKFYPSDFDVEEMNQLPF 569

Query: 624 FCNRY 638
             NRY
Sbjct: 570 QLNRY 574


>02_05_1115 -
           34225793-34225843,34225998-34226072,34226861-34226898,
           34227017-34227113,34227843-34227967,34228071-34228140
          Length = 151

 Score = 27.9 bits (59), Expect = 8.2
 Identities = 11/28 (39%), Positives = 16/28 (57%)
 Frame = +3

Query: 540 GFNLREFVKFVKTSPNKTSISQNLSLPF 623
           G N ++FV F+ T   K S+ Q + L F
Sbjct: 73  GLNFKDFVSFLSTFSAKASVQQKIELIF 100


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,514,389
Number of Sequences: 37544
Number of extensions: 270226
Number of successful extensions: 508
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 499
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 508
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1792053856
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)