Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0862
         (700 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_27599| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.7  
SB_57416| Best HMM Match : rve (HMM E-Value=0.0011)                    28   6.3  
SB_39378| Best HMM Match : VWA (HMM E-Value=0)                         28   8.4  

>SB_27599| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2937

 Score = 29.5 bits (63), Expect = 2.7
 Identities = 11/25 (44%), Positives = 16/25 (64%)
 Frame = +3

Query: 441 CRQHQGLCIFYNFFPTYLLVDFSSY 515
           CR++QGLC  YN  P     D+++Y
Sbjct: 506 CREYQGLCESYNLQPVTCDSDYTTY 530


>SB_57416| Best HMM Match : rve (HMM E-Value=0.0011)
          Length = 807

 Score = 28.3 bits (60), Expect = 6.3
 Identities = 16/35 (45%), Positives = 16/35 (45%)
 Frame = +3

Query: 555 EFVKFVKTSPNKTSISQNLSLPFFCNRYSQWRDLL 659
           E V   K     TSI Q LSL     RYS W  LL
Sbjct: 411 EDVSKTKKEVYATSIEQRLSLAKMIGRYSDWMKLL 445


>SB_39378| Best HMM Match : VWA (HMM E-Value=0)
          Length = 2865

 Score = 27.9 bits (59), Expect = 8.4
 Identities = 11/25 (44%), Positives = 14/25 (56%)
 Frame = -2

Query: 81   CKTRENCSLHQLLQNTYYFYYCLTK 7
            CK+  +CS  Q+  NTY  Y C  K
Sbjct: 1671 CKSNNSCSADQMCVNTYGGYKCSCK 1695


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,969,633
Number of Sequences: 59808
Number of extensions: 342554
Number of successful extensions: 735
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 646
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 734
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1829596184
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)