Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0862
         (700 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL110478-12|CAM33509.1|  108|Caenorhabditis elegans Hypothetical...    30   1.8  
AL110478-9|CAB54343.2|  113|Caenorhabditis elegans Hypothetical ...    30   1.8  
AL023844-1|CAA19526.1|  401|Caenorhabditis elegans Hypothetical ...    29   2.4  
Z50857-6|CAA90720.1|  283|Caenorhabditis elegans Hypothetical pr...    29   3.2  
Z50806-6|CAA90692.1|  283|Caenorhabditis elegans Hypothetical pr...    29   3.2  
AC006638-5|AAP82655.1|  175|Caenorhabditis elegans Stomatin prot...    28   5.6  
AC006638-4|AAP82654.1|  312|Caenorhabditis elegans Stomatin prot...    28   5.6  
AC006638-3|AAK85483.1|  367|Caenorhabditis elegans Stomatin prot...    28   5.6  

>AL110478-12|CAM33509.1|  108|Caenorhabditis elegans Hypothetical
           protein Y26D4A.17 protein.
          Length = 108

 Score = 29.9 bits (64), Expect = 1.8
 Identities = 18/62 (29%), Positives = 30/62 (48%), Gaps = 4/62 (6%)
 Frame = +1

Query: 322 CDLQISDLKNKIGLFFYLCFSLL----FQYFMLILCYSACFFFYVVNTKAYVSFTIFSLP 489
           C  ++  + +KI  F+ L FS L      +F LI+C    FFF  +  ++  S  +  L 
Sbjct: 38  CFEKVKKIFDKINQFYILYFSFLRFHELNHFPLIICIYLIFFFEYITFRSMTS-GLLPLG 96

Query: 490 IC 495
           +C
Sbjct: 97  VC 98


>AL110478-9|CAB54343.2|  113|Caenorhabditis elegans Hypothetical
           protein Y26D4A.5 protein.
          Length = 113

 Score = 29.9 bits (64), Expect = 1.8
 Identities = 18/62 (29%), Positives = 30/62 (48%), Gaps = 4/62 (6%)
 Frame = +1

Query: 322 CDLQISDLKNKIGLFFYLCFSLL----FQYFMLILCYSACFFFYVVNTKAYVSFTIFSLP 489
           C  ++  + +KI  F+ L FS L      +F LI+C    FFF  +  ++  S  +  L 
Sbjct: 43  CFEKVKKIFDKINQFYILYFSFLRFHELNHFPLIICIYLIFFFEYITFRSMTS-GLLPLG 101

Query: 490 IC 495
           +C
Sbjct: 102 VC 103


>AL023844-1|CAA19526.1|  401|Caenorhabditis elegans Hypothetical
           protein Y48A6B.1 protein.
          Length = 401

 Score = 29.5 bits (63), Expect = 2.4
 Identities = 16/57 (28%), Positives = 29/57 (50%), Gaps = 5/57 (8%)
 Frame = +1

Query: 319 MC--DLQISDLKNKIGLFFY---LCFSLLFQYFMLILCYSACFFFYVVNTKAYVSFT 474
           MC  DL + DL+N   ++F+   + F+ ++      LC   CFF  ++N+  +   T
Sbjct: 1   MCTQDLPLFDLENNSTIYFFDQLIAFNQVYTVLHRYLCLFVCFFGVLLNSLHFYVLT 57


>Z50857-6|CAA90720.1|  283|Caenorhabditis elegans Hypothetical
           protein M79.2 protein.
          Length = 283

 Score = 29.1 bits (62), Expect = 3.2
 Identities = 17/52 (32%), Positives = 27/52 (51%), Gaps = 2/52 (3%)
 Frame = +3

Query: 357 WL--ILLFVL*SFIPIFYVNTLLLCMFFFLCRQHQGLCIFYNFFPTYLLVDF 506
           WL  +  F L SF+   ++  +LL +F+F      G CI   +F T +L+ F
Sbjct: 22  WLNKLCFFPLASFVFFLFIKYMLLSIFYF-----YGSCITLTYFSTVVLIFF 68


>Z50806-6|CAA90692.1|  283|Caenorhabditis elegans Hypothetical
           protein M79.2 protein.
          Length = 283

 Score = 29.1 bits (62), Expect = 3.2
 Identities = 17/52 (32%), Positives = 27/52 (51%), Gaps = 2/52 (3%)
 Frame = +3

Query: 357 WL--ILLFVL*SFIPIFYVNTLLLCMFFFLCRQHQGLCIFYNFFPTYLLVDF 506
           WL  +  F L SF+   ++  +LL +F+F      G CI   +F T +L+ F
Sbjct: 22  WLNKLCFFPLASFVFFLFIKYMLLSIFYF-----YGSCITLTYFSTVVLIFF 68


>AC006638-5|AAP82655.1|  175|Caenorhabditis elegans Stomatin protein
           5, isoform c protein.
          Length = 175

 Score = 28.3 bits (60), Expect = 5.6
 Identities = 12/34 (35%), Positives = 18/34 (52%)
 Frame = +1

Query: 385 LLFQYFMLILCYSACFFFYVVNTKAYVSFTIFSL 486
           L+F + +++L +  C FF V   K Y    IF L
Sbjct: 31  LIFSFLLILLSFPWCLFFCVKVVKEYQRAVIFRL 64


>AC006638-4|AAP82654.1|  312|Caenorhabditis elegans Stomatin protein
           5, isoform b protein.
          Length = 312

 Score = 28.3 bits (60), Expect = 5.6
 Identities = 12/34 (35%), Positives = 18/34 (52%)
 Frame = +1

Query: 385 LLFQYFMLILCYSACFFFYVVNTKAYVSFTIFSL 486
           L+F + +++L +  C FF V   K Y    IF L
Sbjct: 115 LIFSFLLILLSFPWCLFFCVKVVKEYQRAVIFRL 148


>AC006638-3|AAK85483.1|  367|Caenorhabditis elegans Stomatin protein
           5, isoform a protein.
          Length = 367

 Score = 28.3 bits (60), Expect = 5.6
 Identities = 12/34 (35%), Positives = 18/34 (52%)
 Frame = +1

Query: 385 LLFQYFMLILCYSACFFFYVVNTKAYVSFTIFSL 486
           L+F + +++L +  C FF V   K Y    IF L
Sbjct: 115 LIFSFLLILLSFPWCLFFCVKVVKEYQRAVIFRL 148


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,560,153
Number of Sequences: 27780
Number of extensions: 284568
Number of successful extensions: 811
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 795
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 811
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1613473434
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)