Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0862
         (700 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U26026-1|AAA69069.1|  377|Apis mellifera long-wavelength rhodops...    25   0.69 
AF091732-1|AAD02869.2|  154|Apis mellifera long-wavelength rhodo...    25   0.69 
DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholi...    23   3.7  
DQ667182-1|ABG75734.1|  445|Apis mellifera GABA-gated chloride c...    22   4.9  
AF094822-1|AAC63381.1|  365|Apis mellifera GABA receptor Rdl sub...    22   4.9  

>U26026-1|AAA69069.1|  377|Apis mellifera long-wavelength rhodopsin
           protein.
          Length = 377

 Score = 25.0 bits (52), Expect = 0.69
 Identities = 19/71 (26%), Positives = 34/71 (47%)
 Frame = +3

Query: 402 YVNTLLLCMFFFLCRQHQGLCIFYNFFPTYLLVDFSSYARAGR*AHGFNLREFVKFVKTS 581
           Y N  LL   + +C    G+ ++  F P +L++    +      AH  N+RE  K +  +
Sbjct: 206 YFNRGLLSASYLVC---YGIWVY--FVPLFLIIYSYWFIIQAVAAHEKNMREQAKKMNVA 260

Query: 582 PNKTSISQNLS 614
             ++S +QN S
Sbjct: 261 SLRSSENQNTS 271


>AF091732-1|AAD02869.2|  154|Apis mellifera long-wavelength
           rhodopsin protein.
          Length = 154

 Score = 25.0 bits (52), Expect = 0.69
 Identities = 19/71 (26%), Positives = 34/71 (47%)
 Frame = +3

Query: 402 YVNTLLLCMFFFLCRQHQGLCIFYNFFPTYLLVDFSSYARAGR*AHGFNLREFVKFVKTS 581
           Y N  LL   + +C    G+ ++  F P +L++    +      AH  N+RE  K +  +
Sbjct: 82  YFNRGLLSASYLVC---YGIWVY--FVPLFLIIYSYWFIIQAVAAHEKNMREQAKKMNVA 136

Query: 582 PNKTSISQNLS 614
             ++S +QN S
Sbjct: 137 SLRSSENQNTS 147


>DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholine
           receptor beta1subunit protein.
          Length = 520

 Score = 22.6 bits (46), Expect = 3.7
 Identities = 13/40 (32%), Positives = 19/40 (47%)
 Frame = +2

Query: 365 SFICALVFYSNILC*YFVTLHVFFSMSSTPRLMYLLQFFP 484
           SF+C LVFY        VTL +   +S    L+ + +  P
Sbjct: 248 SFLCVLVFYLPAEAGEKVTLGISILLSLVVFLLLVSKILP 287


>DQ667182-1|ABG75734.1|  445|Apis mellifera GABA-gated chloride
           channel protein.
          Length = 445

 Score = 22.2 bits (45), Expect = 4.9
 Identities = 9/29 (31%), Positives = 14/29 (48%)
 Frame = +3

Query: 540 GFNLREFVKFVKTSPNKTSISQNLSLPFF 626
           G+ +R+        PN   +S  +SLP F
Sbjct: 160 GYTMRDIRYKWNEGPNSVGVSNEVSLPQF 188


>AF094822-1|AAC63381.1|  365|Apis mellifera GABA receptor Rdl
           subunit protein.
          Length = 365

 Score = 22.2 bits (45), Expect = 4.9
 Identities = 9/29 (31%), Positives = 14/29 (48%)
 Frame = +3

Query: 540 GFNLREFVKFVKTSPNKTSISQNLSLPFF 626
           G+ +R+        PN   +S  +SLP F
Sbjct: 99  GYTMRDIRYKWNEGPNSVGVSNEVSLPQF 127


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 179,976
Number of Sequences: 438
Number of extensions: 3718
Number of successful extensions: 6
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 21439440
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)