Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0862
         (700 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g54270.1 68416.m05998 sucrose-phosphatase 3 (SPP3) nearly ide...    28   5.2  
At1g23880.1 68414.m03012 NHL repeat-containing protein contains ...    27   9.0  

>At3g54270.1 68416.m05998 sucrose-phosphatase 3 (SPP3) nearly
           identical to sucrose-phosphatase (SPP3) [Arabidopsis
           thaliana] GI:16904077
          Length = 425

 Score = 28.3 bits (60), Expect = 5.2
 Identities = 12/27 (44%), Positives = 17/27 (62%)
 Frame = -3

Query: 368 KNKPILFFRSLIWRSHMTHKALLVQCT 288
           +N  +L F +L W +H  H +LLV CT
Sbjct: 27  ENNDLLRFNAL-WEAHYRHDSLLVYCT 52


>At1g23880.1 68414.m03012 NHL repeat-containing protein contains
           Pfam profile PF01436: NHL repeat
          Length = 545

 Score = 27.5 bits (58), Expect = 9.0
 Identities = 13/40 (32%), Positives = 19/40 (47%)
 Frame = +1

Query: 367 FYLCFSLLFQYFMLILCYSACFFFYVVNTKAYVSFTIFSL 486
           FY   S+LF  F+     S  FFF  ++     SF I ++
Sbjct: 7   FYASLSILFCCFLFFFNLSPSFFFLRLSRSVTTSFNILNI 46


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,202,074
Number of Sequences: 28952
Number of extensions: 243059
Number of successful extensions: 541
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 532
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 541
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1496852856
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)