Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0861
         (748 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF222294-1|ABN79654.1|  451|Tribolium castaneum ecdysis triggeri...    22   6.0  
AY295880-1|AAQ62693.1| 1558|Tribolium castaneum chitin synthase ...    22   6.0  
AY291475-1|AAQ55059.1| 1558|Tribolium castaneum chitin synthase ...    22   6.0  
AY800247-1|AAV66724.1|  790|Tribolium castaneum pangolin protein.      21   7.9  
AY800246-1|AAV66723.1|  682|Tribolium castaneum pangolin protein.      21   7.9  

>EF222294-1|ABN79654.1|  451|Tribolium castaneum ecdysis triggering
           hormone receptorisoform B protein.
          Length = 451

 Score = 21.8 bits (44), Expect = 6.0
 Identities = 14/40 (35%), Positives = 18/40 (45%)
 Frame = -1

Query: 247 DGNIVLASFELPESNIDCDTTLTLSL*YCPIPKHI*RILY 128
           DG+IV   F L E  + C   L   L +   P  I  I+Y
Sbjct: 218 DGSIVFVCFSLVEDTLPCVFFLGSILIFFIFPLAILIIVY 257


>AY295880-1|AAQ62693.1| 1558|Tribolium castaneum chitin synthase
            variant 1 protein.
          Length = 1558

 Score = 21.8 bits (44), Expect = 6.0
 Identities = 14/43 (32%), Positives = 21/43 (48%)
 Frame = -1

Query: 550  ESDSSWVVANLLDV*GYFLLDFLKSGLTVWWFSGIHFVYSYDE 422
            +S  ++ + N L V   FLL   K  L + W  G+    +YDE
Sbjct: 1267 QSVFAFFMMNALFVLIVFLLTLKKDYLHIKWPFGVKTNITYDE 1309


>AY291475-1|AAQ55059.1| 1558|Tribolium castaneum chitin synthase CHS1A
            protein.
          Length = 1558

 Score = 21.8 bits (44), Expect = 6.0
 Identities = 14/43 (32%), Positives = 21/43 (48%)
 Frame = -1

Query: 550  ESDSSWVVANLLDV*GYFLLDFLKSGLTVWWFSGIHFVYSYDE 422
            +S  ++ + N L V   FLL   K  L + W  G+    +YDE
Sbjct: 1267 QSVFAFFMMNALFVLIVFLLTLKKDYLHIKWPFGVKTNITYDE 1309


>AY800247-1|AAV66724.1|  790|Tribolium castaneum pangolin protein.
          Length = 790

 Score = 21.4 bits (43), Expect = 7.9
 Identities = 8/28 (28%), Positives = 13/28 (46%)
 Frame = -3

Query: 581 CCLRAIQKWARKRQQLGCSQSS*CMRIL 498
           CC  A+      RQ +  S+   C+R +
Sbjct: 615 CCYHAVAPGTDIRQSIALSRKKKCIRYM 642


>AY800246-1|AAV66723.1|  682|Tribolium castaneum pangolin protein.
          Length = 682

 Score = 21.4 bits (43), Expect = 7.9
 Identities = 8/28 (28%), Positives = 13/28 (46%)
 Frame = -3

Query: 581 CCLRAIQKWARKRQQLGCSQSS*CMRIL 498
           CC  A+      RQ +  S+   C+R +
Sbjct: 507 CCYHAVAPGTDIRQSIALSRKKKCIRYM 534


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 189,938
Number of Sequences: 336
Number of extensions: 4412
Number of successful extensions: 8
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 122,585
effective HSP length: 56
effective length of database: 103,769
effective search space used: 19923648
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)