Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brS-0861
(748 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC794.09c |ef1a-a||translation elongation factor EF-1 alpha Ef... 323 1e-89
SPAC23A1.10 |ef1a-b||translation elongation factor EF-1 alpha Ef... 323 2e-89
SPBC839.15c |ef1a-c||translation elongation factor EF-1 alpha Ef... 323 2e-89
SPBC25B2.01 ||SPBC2G5.08|elongation factor 1 alpha related prote... 159 4e-40
SPCC584.04 |sup35|erf3|translation release factor eRF3 |Schizosa... 141 1e-34
SPBC9B6.04c |tuf1||mitochondrial translation elongation factor E... 95 9e-21
SPBC660.10 |||translation elongation factor G|Schizosaccharomyce... 46 8e-06
SPBC17G9.09 |tif213||translation initiation factor eIF2 gamma su... 42 1e-04
SPAC1B3.04c |||mitochondrial GTPase Guf1 |Schizosaccharomyces po... 38 0.002
SPBC1306.01c ||SPBC409.22c|translation elongation factor G|Schiz... 34 0.019
SPBC1271.15c |||translation initiation factor IF-2Mt|Schizosacch... 34 0.025
SPCP31B10.07 |eft202||translation elongation factor 2 |Schizosac... 32 0.100
SPAC513.01c |eft201|eft2-1, etf2, SPAPYUK71.04c|translation elon... 32 0.100
SPCC553.08c |||GTPase Ria1 |Schizosaccharomyces pombe|chr 3|||Ma... 30 0.30
SPAC56F8.03 |||translation initiation factor IF2 |Schizosaccharo... 29 0.53
SPAC9G1.11c |spn4||septin Spn4|Schizosaccharomyces pombe|chr 1||... 28 1.2
SPAC1952.11c |ure2||urease |Schizosaccharomyces pombe|chr 1|||Ma... 28 1.2
SPBC215.12 |cwf10|spef2, snu114|GTPase Cwf10 |Schizosaccharomyce... 27 2.1
SPBC24C6.08c |||vesicle coat protein|Schizosaccharomyces pombe|c... 27 2.8
SPAC19G12.08 |||fatty acid hydroxylase |Schizosaccharomyces pomb... 25 8.7
>SPCC794.09c |ef1a-a||translation elongation factor EF-1 alpha
Ef1a-a |Schizosaccharomyces pombe|chr 3|||Manual
Length = 460
Score = 323 bits (794), Expect = 1e-89
Identities = 150/194 (77%), Positives = 170/194 (87%)
Frame = +2
Query: 167 LKAERERGITIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGE 346
LKAERERGITIDIALWKFET KY VT+IDAPGHRDFIKNMITGTSQADCAVLI+ GTGE
Sbjct: 63 LKAERERGITIDIALWKFETPKYNVTVIDAPGHRDFIKNMITGTSQADCAVLIIGGGTGE 122
Query: 347 FEAGISKNGQTREHALLAFTLGVKQLIVGVNKMDSTEPPYSEPRFEEIKKEVSSYIKKIG 526
FEAGISK+GQTREHALLA+TLGVKQLIV VNKMD+T +S+ RFEEI KE S++IKK+G
Sbjct: 123 FEAGISKDGQTREHALLAYTLGVKQLIVAVNKMDTT--GWSQARFEEIVKETSNFIKKVG 180
Query: 527 YNPAAVAFVPISGWHGDNMLEPSTKMPWFKGWQVERKEGKADGKCLIEALDAILPPARPT 706
+NP V FVP+SG+ GDNM+EP+T MPW++GWQ E K G GK L+EA+D+I PPARPT
Sbjct: 181 FNPKTVPFVPVSGFQGDNMIEPTTNMPWYQGWQKETKAGVVKGKTLLEAIDSIEPPARPT 240
Query: 707 DKPLRLPLQDVYKI 748
DKPLRLPLQDVYKI
Sbjct: 241 DKPLRLPLQDVYKI 254
Score = 116 bits (279), Expect = 4e-27
Identities = 51/57 (89%), Positives = 54/57 (94%)
Frame = +1
Query: 1 VNIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDNTK 171
+N+VVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEA E+GKGSFKYAWVLD K
Sbjct: 8 INVVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEATELGKGSFKYAWVLDKLK 64
>SPAC23A1.10 |ef1a-b||translation elongation factor EF-1 alpha
Ef1a-b |Schizosaccharomyces pombe|chr 1|||Manual
Length = 460
Score = 323 bits (793), Expect = 2e-89
Identities = 149/194 (76%), Positives = 170/194 (87%)
Frame = +2
Query: 167 LKAERERGITIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGE 346
LKAERERGITIDIALWKFET KY VT+IDAPGHRDFIKNMITGTSQADCA+LI+ GTGE
Sbjct: 63 LKAERERGITIDIALWKFETPKYNVTVIDAPGHRDFIKNMITGTSQADCAILIIGGGTGE 122
Query: 347 FEAGISKNGQTREHALLAFTLGVKQLIVGVNKMDSTEPPYSEPRFEEIKKEVSSYIKKIG 526
FEAGISK+GQTREHALLA+TLGVKQLIV VNKMD+T +S+ RFEEI KE S++IKK+G
Sbjct: 123 FEAGISKDGQTREHALLAYTLGVKQLIVAVNKMDTT--GWSQARFEEIVKETSNFIKKVG 180
Query: 527 YNPAAVAFVPISGWHGDNMLEPSTKMPWFKGWQVERKEGKADGKCLIEALDAILPPARPT 706
+NP V FVP+SG+ GDNM+EP+T MPW++GWQ E K G GK L+EA+D+I PPARPT
Sbjct: 181 FNPKTVPFVPVSGFQGDNMIEPTTNMPWYQGWQKETKAGVVKGKTLLEAIDSIEPPARPT 240
Query: 707 DKPLRLPLQDVYKI 748
DKPLRLPLQDVYKI
Sbjct: 241 DKPLRLPLQDVYKI 254
Score = 116 bits (279), Expect = 4e-27
Identities = 51/57 (89%), Positives = 54/57 (94%)
Frame = +1
Query: 1 VNIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDNTK 171
+N+VVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEA E+GKGSFKYAWVLD K
Sbjct: 8 INVVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEATELGKGSFKYAWVLDKLK 64
>SPBC839.15c |ef1a-c||translation elongation factor EF-1 alpha
Ef1a-c |Schizosaccharomyces pombe|chr 2|||Manual
Length = 460
Score = 323 bits (793), Expect = 2e-89
Identities = 149/194 (76%), Positives = 170/194 (87%)
Frame = +2
Query: 167 LKAERERGITIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGE 346
LKAERERGITIDIALWKFET KY VT+IDAPGHRDFIKNMITGTSQADCA+LI+ GTGE
Sbjct: 63 LKAERERGITIDIALWKFETPKYNVTVIDAPGHRDFIKNMITGTSQADCAILIIGGGTGE 122
Query: 347 FEAGISKNGQTREHALLAFTLGVKQLIVGVNKMDSTEPPYSEPRFEEIKKEVSSYIKKIG 526
FEAGISK+GQTREHALLA+TLGVKQLIV VNKMD+T +S+ RFEEI KE S++IKK+G
Sbjct: 123 FEAGISKDGQTREHALLAYTLGVKQLIVAVNKMDTT--GWSQARFEEIVKETSNFIKKVG 180
Query: 527 YNPAAVAFVPISGWHGDNMLEPSTKMPWFKGWQVERKEGKADGKCLIEALDAILPPARPT 706
+NP V FVP+SG+ GDNM+EP+T MPW++GWQ E K G GK L+EA+D+I PPARPT
Sbjct: 181 FNPKTVPFVPVSGFQGDNMIEPTTNMPWYQGWQKETKAGVVKGKTLLEAIDSIEPPARPT 240
Query: 707 DKPLRLPLQDVYKI 748
DKPLRLPLQDVYKI
Sbjct: 241 DKPLRLPLQDVYKI 254
Score = 116 bits (279), Expect = 4e-27
Identities = 51/57 (89%), Positives = 54/57 (94%)
Frame = +1
Query: 1 VNIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDNTK 171
+N+VVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEA E+GKGSFKYAWVLD K
Sbjct: 8 INVVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEATELGKGSFKYAWVLDKLK 64
>SPBC25B2.01 ||SPBC2G5.08|elongation factor 1 alpha related
protein|Schizosaccharomyces pombe|chr 2|||Manual
Length = 592
Score = 159 bits (386), Expect = 4e-40
Identities = 88/193 (45%), Positives = 116/193 (60%), Gaps = 3/193 (1%)
Frame = +2
Query: 176 ERERGITIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEA 355
ER RG+T+D+A FE+ K I DAPGHRDFI MI G S AD AVL+V + FE
Sbjct: 236 ERARGVTMDVASTTFESDKKIYEIGDAPGHRDFISGMIAGASSADFAVLVVDSSQNNFER 295
Query: 356 GISKNGQTREHALLAFTLGVKQLIVGVNKMDSTEPPYSEPRFEEIKKEVSSY-IKKIGYN 532
G +NGQTREHA L LG+ +++V VNK+D +SE RF+EIK VS + IK +G+
Sbjct: 296 GFLENGQTREHAYLLRALGISEIVVSVNKLDLMS--WSEDRFQEIKNIVSDFLIKMVGFK 353
Query: 533 PAAVAFVPISGWHGDNML--EPSTKMPWFKGWQVERKEGKADGKCLIEALDAILPPARPT 706
+ V FVPIS G N++ + S W+K G L+ ALD ++PP +P
Sbjct: 354 TSNVHFVPISAISGTNLIQKDSSDLYKWYK------------GPTLLSALDQLVPPEKPY 401
Query: 707 DKPLRLPLQDVYK 745
KPLRL + DVY+
Sbjct: 402 RKPLRLSIDDVYR 414
Score = 71.7 bits (168), Expect = 1e-13
Identities = 30/57 (52%), Positives = 42/57 (73%)
Frame = +1
Query: 1 VNIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDNTK 171
V++VV GHVDSGKST G ++++ G I+ R+++K EA GKGSF YAW+LD T+
Sbjct: 178 VHLVVTGHVDSGKSTMLGRIMFELGEINSRSMQKLHNEAANSGKGSFSYAWLLDTTE 234
>SPCC584.04 |sup35|erf3|translation release factor eRF3
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 662
Score = 141 bits (341), Expect = 1e-34
Identities = 73/194 (37%), Positives = 116/194 (59%), Gaps = 4/194 (2%)
Frame = +2
Query: 176 ERERGITIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEA 355
ERE+G T+++ FET +++DAPGH+ ++ NMI G SQAD VL+++A GEFEA
Sbjct: 297 EREKGKTVEVGRAYFETEHRRFSLLDAPGHKGYVTNMINGASQADIGVLVISARRGEFEA 356
Query: 356 GISKNGQTREHALLAFTLGVKQLIVGVNKMDSTEPPYSEPRFEEIKKEVSSYIKKI-GYN 532
G + GQTREHA+LA T G+ L+V +NKMD +SE R++E ++S +++++ GYN
Sbjct: 357 GFERGGQTREHAVLARTQGINHLVVVINKMDEPSVQWSEERYKECVDKLSMFLRRVAGYN 416
Query: 533 PAA-VAFVPISGWHGDNMLE--PSTKMPWFKGWQVERKEGKADGKCLIEALDAILPPARP 703
V ++P+S + G N+ + S+ PW++ G L+E LD++ R
Sbjct: 417 SKTDVKYMPVSAYTGQNVKDRVDSSVCPWYQ------------GPSLLEYLDSMTHLERK 464
Query: 704 TDKPLRLPLQDVYK 745
+ P +P+ YK
Sbjct: 465 VNAPFIMPIASKYK 478
Score = 73.3 bits (172), Expect = 3e-14
Identities = 32/56 (57%), Positives = 44/56 (78%)
Frame = +1
Query: 1 VNIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDNT 168
VNIV IGHVD+GKST G++++ G +DKRT+EK E+EA+E GK S+ +W LD+T
Sbjct: 239 VNIVFIGHVDAGKSTLGGNILFLTGMVDKRTMEKIEREAKEAGKESWYLSWALDST 294
>SPBC9B6.04c |tuf1||mitochondrial translation elongation factor
EF-Tu Tuf1 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 439
Score = 95.1 bits (226), Expect = 9e-21
Identities = 72/207 (34%), Positives = 110/207 (53%), Gaps = 4/207 (1%)
Frame = +2
Query: 140 SNMLGYWTILKA--ERERGITIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADC 313
++ + Y I KA E+ RGITI A ++ET+ + +D PGH D+IKNMITG + D
Sbjct: 83 ASFMDYSQIDKAPEEKARGITISSAHVEYETANRHYAHVDCPGHADYIKNMITGAATMDG 142
Query: 314 AVLIVAAGTGEFEAGISKNGQTREHALLAFTLGVKQLIVGVNKMDSTEPPYSEPRFEEIK 493
A+++V+A G+ QTREH LLA +GVKQ++V +NK+D EP E E++
Sbjct: 143 AIIVVSATDGQMP-------QTREHLLLARQVGVKQIVVYINKVDMVEPDMIELVEMEMR 195
Query: 494 KEVSSYIKKIGYNPAAVAFVPISGWHGDNM-LEPSTKMPWFKGWQVERKEGKADGKCLIE 670
+ +S Y G+ GDN + + + +G + E G L+E
Sbjct: 196 ELLSEY-----------------GFDGDNTPIVSGSALCALEGREPE--IGLNSITKLME 236
Query: 671 ALDA-ILPPARPTDKPLRLPLQDVYKI 748
A+D+ I P R TD P + ++DV+ I
Sbjct: 237 AVDSYITLPERKTDVPFLMAIEDVFSI 263
Score = 29.5 bits (63), Expect = 0.53
Identities = 15/24 (62%), Positives = 16/24 (66%)
Frame = +1
Query: 1 VNIVVIGHVDSGKSTTTGHLIYKC 72
VNI IGHVD GK+T T I KC
Sbjct: 54 VNIGTIGHVDHGKTTLTA-AITKC 76
>SPBC660.10 |||translation elongation factor G|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 813
Score = 45.6 bits (103), Expect = 8e-06
Identities = 34/94 (36%), Positives = 47/94 (50%)
Frame = +2
Query: 167 LKAERERGITIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGE 346
L AER+RGITI+ A F + +ID PGH DF + + D AV I+ +
Sbjct: 71 LPAERQRGITINSAAISFTWRNQRINLIDTPGHADFTFEVERSVAVLDGAVAII-----D 125
Query: 347 FEAGISKNGQTREHALLAFTLGVKQLIVGVNKMD 448
AG+ QT+ A G+ ++I VNKMD
Sbjct: 126 GSAGV--EAQTKVVWKQATKRGIPKVIF-VNKMD 156
Score = 28.7 bits (61), Expect = 0.93
Identities = 10/24 (41%), Positives = 17/24 (70%)
Frame = +1
Query: 4 NIVVIGHVDSGKSTTTGHLIYKCG 75
N+ +I H+D+GK+T T ++Y G
Sbjct: 30 NVGIIAHIDAGKTTLTEKMLYYGG 53
>SPBC17G9.09 |tif213||translation initiation factor eIF2 gamma
subunit|Schizosaccharomyces pombe|chr 2|||Manual
Length = 446
Score = 41.5 bits (93), Expect = 1e-04
Identities = 23/93 (24%), Positives = 42/93 (45%)
Frame = +2
Query: 236 YVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHALLAFTLGV 415
+V+ +D PGH + M+ G + D A+L++A QT EH + +
Sbjct: 109 HVSFVDCPGHDILMATMLNGAAVMDAALLLIAGNES------CPQPQTSEHLAAIEIMQL 162
Query: 416 KQLIVGVNKMDSTEPPYSEPRFEEIKKEVSSYI 514
K +I+ NK+D +E ++ I K + +
Sbjct: 163 KHIIILQNKVDLIRESAAEEHYQSILKFIKGTV 195
>SPAC1B3.04c |||mitochondrial GTPase Guf1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 646
Score = 37.9 bits (84), Expect = 0.002
Identities = 19/63 (30%), Positives = 32/63 (50%), Gaps = 4/63 (6%)
Frame = +2
Query: 167 LKAERERGITIDIA----LWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAA 334
L+ ER RGIT+ ++ + Y + +ID PGH DF ++ + + +L+V A
Sbjct: 98 LEVERRRGITVKAQTCSMIYYYHGQSYLLNLIDTPGHVDFRAEVMHSLAACEGCILLVDA 157
Query: 335 GTG 343
G
Sbjct: 158 SQG 160
>SPBC1306.01c ||SPBC409.22c|translation elongation factor
G|Schizosaccharomyces pombe|chr 2|||Manual
Length = 770
Score = 34.3 bits (75), Expect = 0.019
Identities = 21/57 (36%), Positives = 29/57 (50%)
Frame = +2
Query: 218 FETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTREH 388
FE S Y + IID PGH DF + D AVL++ A +G I+ + Q R +
Sbjct: 141 FEKS-YNINIIDTPGHIDFTIEVERALRVLDGAVLVLCAVSGVQSQTITVDRQMRRY 196
Score = 29.1 bits (62), Expect = 0.70
Identities = 12/26 (46%), Positives = 17/26 (65%)
Frame = +1
Query: 4 NIVVIGHVDSGKSTTTGHLIYKCGGI 81
NI + H+DSGK+T T ++Y G I
Sbjct: 61 NIGISAHIDSGKTTFTERVLYYTGRI 86
>SPBC1271.15c |||translation initiation factor
IF-2Mt|Schizosaccharomyces pombe|chr 2|||Manual
Length = 686
Score = 33.9 bits (74), Expect = 0.025
Identities = 19/54 (35%), Positives = 26/54 (48%), Gaps = 2/54 (3%)
Frame = +2
Query: 188 GITIDIALWK--FETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTG 343
GIT I + F+ ++T +D PGH F G + AD VL+VA G
Sbjct: 203 GITQKIGAFTVPFDKGSKFITFLDTPGHMAFEAMRKRGANIADIVVLVVAGDDG 256
>SPCP31B10.07 |eft202||translation elongation factor 2
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 842
Score = 31.9 bits (69), Expect = 0.100
Identities = 14/24 (58%), Positives = 16/24 (66%)
Frame = +1
Query: 4 NIVVIGHVDSGKSTTTGHLIYKCG 75
N+ VI HVD GKST T L+ K G
Sbjct: 21 NMSVIAHVDHGKSTLTDSLVQKAG 44
Score = 27.9 bits (59), Expect = 1.6
Identities = 11/32 (34%), Positives = 18/32 (56%)
Frame = +2
Query: 233 YYVTIIDAPGHRDFIKNMITGTSQADCAVLIV 328
+ V +ID+PGH DF + D A+++V
Sbjct: 98 FLVNLIDSPGHVDFSSEVTAALRVTDGALVVV 129
>SPAC513.01c |eft201|eft2-1, etf2, SPAPYUK71.04c|translation
elongation factor 2 |Schizosaccharomyces pombe|chr
1|||Manual
Length = 842
Score = 31.9 bits (69), Expect = 0.100
Identities = 14/24 (58%), Positives = 16/24 (66%)
Frame = +1
Query: 4 NIVVIGHVDSGKSTTTGHLIYKCG 75
N+ VI HVD GKST T L+ K G
Sbjct: 21 NMSVIAHVDHGKSTLTDSLVQKAG 44
Score = 27.9 bits (59), Expect = 1.6
Identities = 11/32 (34%), Positives = 18/32 (56%)
Frame = +2
Query: 233 YYVTIIDAPGHRDFIKNMITGTSQADCAVLIV 328
+ V +ID+PGH DF + D A+++V
Sbjct: 98 FLVNLIDSPGHVDFSSEVTAALRVTDGALVVV 129
>SPCC553.08c |||GTPase Ria1 |Schizosaccharomyces pombe|chr
3|||Manual
Length = 1000
Score = 30.3 bits (65), Expect = 0.30
Identities = 13/37 (35%), Positives = 21/37 (56%)
Frame = +2
Query: 233 YYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTG 343
Y + +ID+PGH DF + + + D A ++V A G
Sbjct: 94 YLINLIDSPGHVDFSSEVSSASRLCDGAFVLVDAVEG 130
>SPAC56F8.03 |||translation initiation factor IF2
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1079
Score = 29.5 bits (63), Expect = 0.53
Identities = 12/28 (42%), Positives = 16/28 (57%)
Frame = +2
Query: 245 IIDAPGHRDFIKNMITGTSQADCAVLIV 328
IID PGH F GTS + A+L++
Sbjct: 553 IIDTPGHESFTNLRSRGTSLCNIAILVI 580
>SPAC9G1.11c |spn4||septin Spn4|Schizosaccharomyces pombe|chr
1|||Manual
Length = 380
Score = 28.3 bits (60), Expect = 1.2
Identities = 13/36 (36%), Positives = 21/36 (58%), Gaps = 2/36 (5%)
Frame = +2
Query: 182 ERGITIDIALWKFETSKYYV--TIIDAPGHRDFIKN 283
E+ + I+I + E +++ T+ID PG DFI N
Sbjct: 68 EKTVEIEITKAELEEKNFHLRLTVIDTPGFGDFINN 103
>SPAC1952.11c |ure2||urease |Schizosaccharomyces pombe|chr
1|||Manual
Length = 835
Score = 28.3 bits (60), Expect = 1.2
Identities = 15/46 (32%), Positives = 19/46 (41%)
Frame = -2
Query: 702 GRAGGRMASRASMRHFPSALPSLRSTCHPLNQGILVEGSNMLSPCH 565
G GG S+ P+ LPS + P L E +ML CH
Sbjct: 545 GAGGGHAPDIISLVQNPNILPSSTNPTRPFTTNTLDEELDMLMVCH 590
>SPBC215.12 |cwf10|spef2, snu114|GTPase Cwf10 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 983
Score = 27.5 bits (58), Expect = 2.1
Identities = 17/56 (30%), Positives = 28/56 (50%), Gaps = 5/56 (8%)
Frame = +2
Query: 176 ERERGITID-----IALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIV 328
ERER ++I +A+ + + ID PGH DF+ + + +D VL+V
Sbjct: 185 ERERVMSIKSTPLTLAVSDMKGKTFAFQCIDTPGHVDFVDEVAAPMAISDGVVLVV 240
>SPBC24C6.08c |||vesicle coat protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 367
Score = 27.1 bits (57), Expect = 2.8
Identities = 15/63 (23%), Positives = 31/63 (49%), Gaps = 3/63 (4%)
Frame = +3
Query: 465 TVSPDLRKSRRKYPHTSRRLATTQLL---SLSCPFLDGTETTCWSLQPKCLGSRDGRWSV 635
+ +PD+ ++PHT +R +T + L LSC + +E + P G +D + +
Sbjct: 145 STNPDVLYMSSQHPHTQQRYSTLKRLMVRCLSCEYSTLSEASDSMSNPLFFGDQDNGYVI 204
Query: 636 RKA 644
++
Sbjct: 205 SQS 207
>SPAC19G12.08 |||fatty acid hydroxylase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 347
Score = 25.4 bits (53), Expect = 8.7
Identities = 18/57 (31%), Positives = 28/57 (49%)
Frame = +2
Query: 443 MDSTEPPYSEPRFEEIKKEVSSYIKKIGYNPAAVAFVPISGWHGDNMLEPSTKMPWF 613
+D +P + F IKK+V Y+ ++ + P + G N LEP TK PW+
Sbjct: 107 LDLKKPLLPQILFGNIKKDV--YLDQV-HRPRHYRGSGSAPLFG-NFLEPLTKTPWY 159
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,283,342
Number of Sequences: 5004
Number of extensions: 72159
Number of successful extensions: 270
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 235
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 262
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 355273338
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -