Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0861
         (748 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_8918| Best HMM Match : GTP_EFTU (HMM E-Value=1.09301e-43)          138   6e-33
SB_50386| Best HMM Match : GTP_EFTU (HMM E-Value=1.6e-09)             113   2e-25
SB_51711| Best HMM Match : GTP_EFTU_D3 (HMM E-Value=0)                 97   1e-20
SB_18076| Best HMM Match : GTP_EFTU (HMM E-Value=0.018)                87   2e-17
SB_43410| Best HMM Match : GTP_EFTU (HMM E-Value=3.9e-26)              41   0.001
SB_7329| Best HMM Match : GTP_EFTU (HMM E-Value=0)                     41   0.001
SB_3698| Best HMM Match : GTP_EFTU (HMM E-Value=9.3e-34)               35   0.061
SB_50050| Best HMM Match : No HMM Matches (HMM E-Value=.)              34   0.11 
SB_44740| Best HMM Match : GTP_EFTU (HMM E-Value=0)                    31   0.75 
SB_19418| Best HMM Match : Mucin (HMM E-Value=0.024)                   30   1.7  
SB_18949| Best HMM Match : GTP_EFTU (HMM E-Value=1.7e-10)              30   2.3  
SB_22769| Best HMM Match : GTP_EFTU (HMM E-Value=3.9e-07)              29   5.3  
SB_6916| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   5.3  
SB_13701| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.0  
SB_23862| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.0  
SB_43213| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   9.2  
SB_22651| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   9.2  

>SB_8918| Best HMM Match : GTP_EFTU (HMM E-Value=1.09301e-43)
          Length = 547

 Score =  138 bits (333), Expect = 6e-33
 Identities = 58/120 (48%), Positives = 88/120 (73%)
 Frame = +2

Query: 176 ERERGITIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEA 355
           ER++G T+++    F+T   + T++DAPGH+ F+ NMI+G +QAD  VL+++A  GEFE 
Sbjct: 203 ERDKGNTVEVGRAAFDTDTKHFTLLDAPGHKSFVPNMISGATQADLGVLVISARKGEFET 262

Query: 356 GISKNGQTREHALLAFTLGVKQLIVGVNKMDSTEPPYSEPRFEEIKKEVSSYIKKIGYNP 535
           G  + GQTREHA+LA T GVK L++ VNKMD     ++E R+EEIK +++ ++KK+G+NP
Sbjct: 263 GFERGGQTREHAMLAKTAGVKHLVILVNKMDDPTVKWNEERYEEIKVKLTPFLKKVGFNP 322



 Score = 40.3 bits (90), Expect = 0.002
 Identities = 15/36 (41%), Positives = 25/36 (69%)
 Frame = +1

Query: 64  YKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDNTK 171
           Y  G +DKRT+EK+E+EA+E  + ++  +W LD  +
Sbjct: 166 YLTGQVDKRTLEKYEREAKEKNRETWYLSWALDTNQ 201


>SB_50386| Best HMM Match : GTP_EFTU (HMM E-Value=1.6e-09)
          Length = 123

 Score =  113 bits (271), Expect = 2e-25
 Identities = 50/84 (59%), Positives = 65/84 (77%)
 Frame = +2

Query: 197 IDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQ 376
           +D+ L +F+T    +T++DAPGH+DFI NMITG +QAD A+L+V A TGEFEAG    GQ
Sbjct: 1   MDVGLTRFQTKNKVITLMDAPGHKDFIPNMITGAAQADVAILVVDAITGEFEAGFESGGQ 60

Query: 377 TREHALLAFTLGVKQLIVGVNKMD 448
           TREHA+L  +LGV QLIV +NK+D
Sbjct: 61  TREHAILVRSLGVTQLIVAINKLD 84


>SB_51711| Best HMM Match : GTP_EFTU_D3 (HMM E-Value=0)
          Length = 322

 Score = 97.5 bits (232), Expect = 1e-20
 Identities = 44/46 (95%), Positives = 45/46 (97%)
 Frame = +2

Query: 167 LKAERERGITIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQ 304
           LKAERERGITIDIALWKFET KYYVT+IDAPGHRDFIKNMITGTSQ
Sbjct: 15  LKAERERGITIDIALWKFETLKYYVTVIDAPGHRDFIKNMITGTSQ 60



 Score = 76.2 bits (179), Expect = 3e-14
 Identities = 36/63 (57%), Positives = 44/63 (69%), Gaps = 6/63 (9%)
 Frame = +2

Query: 578 NMLEPSTKMPWFKGWQVER------KEGKADGKCLIEALDAILPPARPTDKPLRLPLQDV 739
           NM+  +++MPWFK W +ER      KE  A G  L E LD+ILPP+RP+  PLRLPLQDV
Sbjct: 53  NMITGTSQMPWFKQWTIERVDPATKKEANASGVTLFEGLDSILPPSRPSGLPLRLPLQDV 112

Query: 740 YKI 748
           YKI
Sbjct: 113 YKI 115



 Score = 35.1 bits (77), Expect = 0.061
 Identities = 14/16 (87%), Positives = 14/16 (87%)
 Frame = +1

Query: 124 MGKGSFKYAWVLDNTK 171
           MGKGSFKYAWVLD  K
Sbjct: 1   MGKGSFKYAWVLDKLK 16


>SB_18076| Best HMM Match : GTP_EFTU (HMM E-Value=0.018)
          Length = 106

 Score = 86.6 bits (205), Expect = 2e-17
 Identities = 38/42 (90%), Positives = 41/42 (97%)
 Frame = +1

Query: 1   VNIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEM 126
           +NIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKE+ E+
Sbjct: 8   INIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKESSEV 49


>SB_43410| Best HMM Match : GTP_EFTU (HMM E-Value=3.9e-26)
          Length = 541

 Score = 41.1 bits (92), Expect = 0.001
 Identities = 30/115 (26%), Positives = 51/115 (44%)
 Frame = +2

Query: 170 KAERERGITIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEF 349
           K E ER ITI +         Y    +D PGH   +  M+ G +  D A+L++A      
Sbjct: 51  KNELERNITIKLG--------YANAKVDCPGHDILMATMLNGAAVMDAALLLIAGNES-- 100

Query: 350 EAGISKNGQTREHALLAFTLGVKQLIVGVNKMDSTEPPYSEPRFEEIKKEVSSYI 514
                   QT EH      + +K +++  NK+D  +   ++ ++++I K V   I
Sbjct: 101 ----CPQPQTSEHLAAIEIMKLKHILILQNKIDLVKESQAKDQYDQILKFVQGTI 151


>SB_7329| Best HMM Match : GTP_EFTU (HMM E-Value=0)
          Length = 359

 Score = 40.7 bits (91), Expect = 0.001
 Identities = 15/59 (25%), Positives = 32/59 (54%)
 Frame = +2

Query: 167 LKAERERGITIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTG 343
           ++ ER+RGI++  ++  F      + I+D PGH+DF ++     +  D  ++++    G
Sbjct: 57  MEIERQRGISVATSVLAFNYRDKKINILDTPGHKDFAEDTFRTLTAVDSVIVVIDVAKG 115


>SB_3698| Best HMM Match : GTP_EFTU (HMM E-Value=9.3e-34)
          Length = 240

 Score = 35.1 bits (77), Expect = 0.061
 Identities = 29/107 (27%), Positives = 45/107 (42%)
 Frame = +2

Query: 188 GITIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISK 367
           GIT  I  +  +     +  +D PGH  F      G    D  +++VAA           
Sbjct: 123 GITQHIGAYSVKVGDQKIAFLDTPGHEAFTAMRARGAQVTDLVIIVVAADDDVMP----- 177

Query: 368 NGQTREHALLAFTLGVKQLIVGVNKMDSTEPPYSEPRFEEIKKEVSS 508
             QT+E    A   GV  +I  +NK+D    P + P  + IK ++S+
Sbjct: 178 --QTKEAISHAQAAGV-PIIFAINKIDK---PNANP--DNIKTQLST 216


>SB_50050| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 545

 Score = 34.3 bits (75), Expect = 0.11
 Identities = 24/70 (34%), Positives = 34/70 (48%)
 Frame = +2

Query: 239 VTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHALLAFTLGVK 418
           +T ID PGH  F      G +  D  VL+VAA  G      ++  ++  HA+ A      
Sbjct: 78  ITFIDTPGHAAFNSMRARGANVTDIVVLVVAADDGV----KTQTVESIRHAMHAKV---- 129

Query: 419 QLIVGVNKMD 448
            LIV +NK+D
Sbjct: 130 PLIVAINKID 139


>SB_44740| Best HMM Match : GTP_EFTU (HMM E-Value=0)
          Length = 833

 Score = 31.5 bits (68), Expect = 0.75
 Identities = 14/24 (58%), Positives = 16/24 (66%)
 Frame = +1

Query: 4  NIVVIGHVDSGKSTTTGHLIYKCG 75
          N+ VI HVD GKST T  L+ K G
Sbjct: 20 NMSVIAHVDHGKSTLTDSLVSKAG 43



 Score = 28.3 bits (60), Expect = 7.0
 Identities = 11/37 (29%), Positives = 20/37 (54%)
 Frame = +2

Query: 233 YYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTG 343
           + + +ID+PGH DF   +       D A+++V   +G
Sbjct: 99  FLINLIDSPGHVDFSSEVTAALRVTDGALVVVDCVSG 135


>SB_19418| Best HMM Match : Mucin (HMM E-Value=0.024)
          Length = 1213

 Score = 30.3 bits (65), Expect = 1.7
 Identities = 21/72 (29%), Positives = 32/72 (44%), Gaps = 9/72 (12%)
 Frame = -2

Query: 513  MYEDTS---FLISSNLGSLYGGSVESILFTPTMSCLTPRVKASKAC------SRV*PFLE 361
            +Y+D S    L+S N   L   ++E IL TPT    +    + K C      +   P   
Sbjct: 796  LYQDPSKLTALLSCNFNDLKIDNMEVILLTPTSMAASMATSSKKVCPSSAPTTTTNPTPS 855

Query: 360  IPASNSPVPAAT 325
            +   NSP+P+ T
Sbjct: 856  VTNGNSPIPSGT 867


>SB_18949| Best HMM Match : GTP_EFTU (HMM E-Value=1.7e-10)
          Length = 783

 Score = 29.9 bits (64), Expect = 2.3
 Identities = 13/28 (46%), Positives = 16/28 (57%)
 Frame = +2

Query: 245 IIDAPGHRDFIKNMITGTSQADCAVLIV 328
           IID PGH  F      G+S  D A+L+V
Sbjct: 682 IIDTPGHESFSNLRSRGSSLCDMAILVV 709


>SB_22769| Best HMM Match : GTP_EFTU (HMM E-Value=3.9e-07)
          Length = 203

 Score = 28.7 bits (61), Expect = 5.3
 Identities = 23/81 (28%), Positives = 37/81 (45%), Gaps = 13/81 (16%)
 Frame = +2

Query: 179 RERGITIDIALWKFETSK-------------YYVTIIDAPGHRDFIKNMITGTSQADCAV 319
           +ERGIT+D+    F+ +                +T++D PGH   IK +I G      A 
Sbjct: 71  QERGITLDLGFSSFQVALPEHLRSAGSEHDLLQMTLVDCPGHASLIKTIIGG------AQ 124

Query: 320 LIVAAGTGEFEAGISKNGQTR 382
           +I   GT   E G  ++G+ +
Sbjct: 125 IIGECGT--IEGGFGQSGKVK 143


>SB_6916| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2670

 Score = 28.7 bits (61), Expect = 5.3
 Identities = 13/33 (39%), Positives = 17/33 (51%)
 Frame = +1

Query: 4    NIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEK 102
            N  ++ HVD GKST    L+   G I K +  K
Sbjct: 1943 NFSIVAHVDHGKSTLADRLLEVTGTISKSSDNK 1975


>SB_13701| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 476

 Score = 28.3 bits (60), Expect = 7.0
 Identities = 8/25 (32%), Positives = 14/25 (56%)
 Frame = +2

Query: 566 WHGDNMLEPSTKMPWFKGWQVERKE 640
           +H DN    +   PWF+ W  +++E
Sbjct: 191 YHNDNKTHSTQTGPWFRAWSNQKRE 215


>SB_23862| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 3112

 Score = 28.3 bits (60), Expect = 7.0
 Identities = 18/52 (34%), Positives = 26/52 (50%), Gaps = 5/52 (9%)
 Frame = +2

Query: 449  STEPPYSEPRFEEIKKE----VSSYIKKIGYNPA-AVAFVPISGWHGDNMLE 589
            ST    S+  FE  KK      +S+ K    +P+  + FVP   WHG+ M+E
Sbjct: 1062 STRANSSQGGFEAKKKSWTKLSASFAKPEVVDPSDKIRFVPAVNWHGEQMIE 1113


>SB_43213| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 919

 Score = 27.9 bits (59), Expect = 9.2
 Identities = 13/37 (35%), Positives = 21/37 (56%)
 Frame = -1

Query: 622 PSLEPRHFG*RLQHVVSVPSRNGHESDSSWVVANLLD 512
           P+LEP + G  L  + S  S  GH+ D+   ++ LL+
Sbjct: 378 PNLEPSYIGKMLATIESTLSAKGHQEDAEEFLSCLLN 414


>SB_22651| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 950

 Score = 27.9 bits (59), Expect = 9.2
 Identities = 23/64 (35%), Positives = 35/64 (54%), Gaps = 1/64 (1%)
 Frame = +2

Query: 320 LIVAAGTGEFEAGISKNGQTREHALLAFTLGVK-QLIVGVNKMDSTEPPYSEPRFEEIKK 496
           ++VAA   EF A ++KNG     ++  F  G + QL +G + M+ TE P   P FE++K 
Sbjct: 371 VVVAACGAEFTAVVTKNG-----SVYTFGQGNQGQLGLGSSMME-TEFPERIPLFEKVKA 424

Query: 497 EVSS 508
              S
Sbjct: 425 RTVS 428


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 25,380,540
Number of Sequences: 59808
Number of extensions: 572914
Number of successful extensions: 1819
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 1640
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1814
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 2022185256
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)