Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brS-0861
(748 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U51994-6|AAA96068.1| 463|Caenorhabditis elegans Elongation fact... 352 2e-97
U40935-2|AAA81688.1| 463|Caenorhabditis elegans Elongation fact... 352 2e-97
U51994-7|AAO21384.1| 429|Caenorhabditis elegans Elongation fact... 184 3e-75
Z81098-7|CAI79193.2| 592|Caenorhabditis elegans Hypothetical pr... 177 7e-45
Z81098-6|CAB03180.3| 610|Caenorhabditis elegans Hypothetical pr... 177 7e-45
U51994-9|AAO21383.1| 267|Caenorhabditis elegans Elongation fact... 175 3e-44
Z92835-1|CAB07395.2| 532|Caenorhabditis elegans Hypothetical pr... 149 3e-36
U51994-8|AAO21382.1| 77|Caenorhabditis elegans Elongation fact... 120 1e-27
U80437-9|AAN84843.1| 439|Caenorhabditis elegans Tu elongation f... 85 7e-17
AB010028-1|BAA31345.1| 439|Caenorhabditis elegans mitochondrial... 85 7e-17
D38472-1|BAA07492.1| 495|Caenorhabditis elegans elongation fact... 83 3e-16
D38471-1|BAA07491.1| 496|Caenorhabditis elegans elongation fact... 83 3e-16
AC024859-25|AAK29979.1| 496|Caenorhabditis elegans Tu elongatio... 83 3e-16
L13200-4|AAA28191.2| 645|Caenorhabditis elegans Hypothetical pr... 47 2e-05
Z99709-7|CAB16862.2| 500|Caenorhabditis elegans Hypothetical pr... 44 1e-04
Z70780-15|CAA94822.2| 702|Caenorhabditis elegans Hypothetical p... 44 2e-04
Z81519-1|CAB04216.1| 750|Caenorhabditis elegans Hypothetical pr... 38 0.006
AC025716-9|AAK39619.1| 469|Caenorhabditis elegans Hypothetical ... 38 0.010
AC006714-2|AAK29716.2| 689|Caenorhabditis elegans Hypothetical ... 38 0.010
AC024817-55|AAF59563.3| 366|Caenorhabditis elegans Hypothetical... 33 0.16
U50193-2|AAA91248.1| 974|Caenorhabditis elegans Elongation fact... 33 0.21
M86958-1|AAA21824.1| 849|Caenorhabditis elegans eft-1 protein. 33 0.21
Z83235-9|CAI79209.1| 705|Caenorhabditis elegans Hypothetical pr... 32 0.38
Z83235-8|CAB05774.2| 894|Caenorhabditis elegans Hypothetical pr... 32 0.38
DQ867020-1|ABI49097.1| 1074|Caenorhabditis elegans eukaryotic tr... 32 0.38
Z81068-5|CAB02985.1| 852|Caenorhabditis elegans Hypothetical pr... 31 0.66
M86959-1|AAD03339.1| 852|Caenorhabditis elegans elongation fact... 31 0.66
AL008869-2|CAC42315.1| 810|Caenorhabditis elegans Hypothetical ... 29 2.6
AL008869-1|CAA15516.1| 808|Caenorhabditis elegans Hypothetical ... 29 2.6
AB032749-1|BAA92158.1| 810|Caenorhabditis elegans EAT-20B protein. 29 2.6
AB032748-1|BAA92157.1| 808|Caenorhabditis elegans EAT-20A protein. 29 2.6
AF067211-3|ABC71845.1| 720|Caenorhabditis elegans Hypothetical ... 29 3.5
AF067211-2|AAC16990.3| 745|Caenorhabditis elegans Hypothetical ... 29 3.5
Z68296-5|CAD59142.2| 1677|Caenorhabditis elegans Hypothetical pr... 29 4.6
Z68296-4|CAA92591.3| 1838|Caenorhabditis elegans Hypothetical pr... 29 4.6
Z99709-6|CAB16863.1| 459|Caenorhabditis elegans Hypothetical pr... 28 6.1
Z75710-2|CAB00025.2| 381|Caenorhabditis elegans Hypothetical pr... 28 8.1
>U51994-6|AAA96068.1| 463|Caenorhabditis elegans Elongation factor
protein 4, isoforma protein.
Length = 463
Score = 352 bits (865), Expect = 2e-97
Identities = 164/194 (84%), Positives = 176/194 (90%)
Frame = +2
Query: 167 LKAERERGITIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGE 346
LKAERERGITIDIALWKFET+KYY+TIIDAPGHRDFIKNMITGTSQADCAVL+VA GTGE
Sbjct: 63 LKAERERGITIDIALWKFETAKYYITIIDAPGHRDFIKNMITGTSQADCAVLVVACGTGE 122
Query: 347 FEAGISKNGQTREHALLAFTLGVKQLIVGVNKMDSTEPPYSEPRFEEIKKEVSSYIKKIG 526
FEAGISKNGQTREHALLA TLGVKQLIV NKMDSTEPP+SE RF EI EVS +IKKIG
Sbjct: 123 FEAGISKNGQTREHALLAQTLGVKQLIVACNKMDSTEPPFSEARFTEITNEVSGFIKKIG 182
Query: 527 YNPAAVAFVPISGWHGDNMLEPSTKMPWFKGWQVERKEGKADGKCLIEALDAILPPARPT 706
YNP AV FVPISG++GDNMLE S+ MPWFKGW VERKEG A GK L+EALD+I+PP RPT
Sbjct: 183 YNPKAVPFVPISGFNGDNMLEVSSNMPWFKGWAVERKEGNASGKTLLEALDSIIPPQRPT 242
Query: 707 DKPLRLPLQDVYKI 748
D+PLRLPLQDVYKI
Sbjct: 243 DRPLRLPLQDVYKI 256
Score = 120 bits (289), Expect = 1e-27
Identities = 54/57 (94%), Positives = 55/57 (96%)
Frame = +1
Query: 1 VNIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDNTK 171
+NIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLD K
Sbjct: 8 INIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLK 64
>U40935-2|AAA81688.1| 463|Caenorhabditis elegans Elongation factor
protein 3 protein.
Length = 463
Score = 352 bits (865), Expect = 2e-97
Identities = 164/194 (84%), Positives = 176/194 (90%)
Frame = +2
Query: 167 LKAERERGITIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGE 346
LKAERERGITIDIALWKFET+KYY+TIIDAPGHRDFIKNMITGTSQADCAVL+VA GTGE
Sbjct: 63 LKAERERGITIDIALWKFETAKYYITIIDAPGHRDFIKNMITGTSQADCAVLVVACGTGE 122
Query: 347 FEAGISKNGQTREHALLAFTLGVKQLIVGVNKMDSTEPPYSEPRFEEIKKEVSSYIKKIG 526
FEAGISKNGQTREHALLA TLGVKQLIV NKMDSTEPP+SE RF EI EVS +IKKIG
Sbjct: 123 FEAGISKNGQTREHALLAQTLGVKQLIVACNKMDSTEPPFSEARFTEITNEVSGFIKKIG 182
Query: 527 YNPAAVAFVPISGWHGDNMLEPSTKMPWFKGWQVERKEGKADGKCLIEALDAILPPARPT 706
YNP AV FVPISG++GDNMLE S+ MPWFKGW VERKEG A GK L+EALD+I+PP RPT
Sbjct: 183 YNPKAVPFVPISGFNGDNMLEVSSNMPWFKGWAVERKEGNASGKTLLEALDSIIPPQRPT 242
Query: 707 DKPLRLPLQDVYKI 748
D+PLRLPLQDVYKI
Sbjct: 243 DRPLRLPLQDVYKI 256
Score = 120 bits (289), Expect = 1e-27
Identities = 54/57 (94%), Positives = 55/57 (96%)
Frame = +1
Query: 1 VNIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDNTK 171
+NIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLD K
Sbjct: 8 INIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLK 64
>U51994-7|AAO21384.1| 429|Caenorhabditis elegans Elongation factor
protein 4, isoformd protein.
Length = 429
Score = 184 bits (449), Expect(2) = 3e-75
Identities = 83/109 (76%), Positives = 93/109 (85%)
Frame = +2
Query: 422 LIVGVNKMDSTEPPYSEPRFEEIKKEVSSYIKKIGYNPAAVAFVPISGWHGDNMLEPSTK 601
L+V NKMDSTEPP+SE RF EI EVS +IKKIGYNP AV FVPISG++GDNMLE S+
Sbjct: 114 LVVACNKMDSTEPPFSEARFTEITNEVSGFIKKIGYNPKAVPFVPISGFNGDNMLEVSSN 173
Query: 602 MPWFKGWQVERKEGKADGKCLIEALDAILPPARPTDKPLRLPLQDVYKI 748
MPWFKGW VERKEG A GK L+EALD+I+PP RPTD+PLRLPLQDVYKI
Sbjct: 174 MPWFKGWAVERKEGNASGKTLLEALDSIIPPQRPTDRPLRLPLQDVYKI 222
Score = 120 bits (289), Expect = 1e-27
Identities = 54/57 (94%), Positives = 55/57 (96%)
Frame = +1
Query: 1 VNIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDNTK 171
+NIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLD K
Sbjct: 8 INIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLK 64
Score = 115 bits (277), Expect(2) = 3e-75
Identities = 52/55 (94%), Positives = 55/55 (100%)
Frame = +2
Query: 167 LKAERERGITIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVA 331
LKAERERGITIDIALWKFET+KYY+TIIDAPGHRDFIKNMITGTSQADCAVL+VA
Sbjct: 63 LKAERERGITIDIALWKFETAKYYITIIDAPGHRDFIKNMITGTSQADCAVLVVA 117
>Z81098-7|CAI79193.2| 592|Caenorhabditis elegans Hypothetical
protein K07A12.4b protein.
Length = 592
Score = 177 bits (431), Expect = 7e-45
Identities = 90/192 (46%), Positives = 130/192 (67%), Gaps = 1/192 (0%)
Frame = +2
Query: 176 ERERGITIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEA 355
ERERG+T+DI FETS + ++DAPGH+DFI NMITGTSQAD A+L+V A TGEFE
Sbjct: 229 ERERGVTMDIGRTSFETSHRRIVLLDAPGHKDFISNMITGTSQADAAILVVNATTGEFET 288
Query: 356 GISKNGQTREHALLAFTLGVKQLIVGVNKMDSTEPPYSEPRFEEIKKEVSSYI-KKIGYN 532
G GQT+EHALL +LGV QLIV VNK+D+ + +S+ RF+EIK +S ++ ++ G++
Sbjct: 289 GFENGGQTKEHALLLRSLGVTQLIVAVNKLDTVD--WSQDRFDEIKNNLSVFLTRQAGFS 346
Query: 533 PAAVAFVPISGWHGDNMLEPSTKMPWFKGWQVERKEGKADGKCLIEALDAILPPARPTDK 712
FVP+SG+ G+N+++ ++ W+ DG CL+E +D+ + P P+D
Sbjct: 347 KP--KFVPVSGFTGENLIK-RMELDWY------------DGPCLLELIDSFVAPQPPSDG 391
Query: 713 PLRLPLQDVYKI 748
PLR+ + DV K+
Sbjct: 392 PLRIGISDVLKV 403
Score = 77.8 bits (183), Expect = 8e-15
Identities = 32/57 (56%), Positives = 43/57 (75%)
Frame = +1
Query: 1 VNIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDNTK 171
+N++V+GHVD+GKST GHL++ +D RTI+KF+ EA GK SF YAWVLD T+
Sbjct: 171 INLIVVGHVDAGKSTLMGHLLHDLEVVDSRTIDKFKHEAARNGKASFAYAWVLDETE 227
>Z81098-6|CAB03180.3| 610|Caenorhabditis elegans Hypothetical
protein K07A12.4a protein.
Length = 610
Score = 177 bits (431), Expect = 7e-45
Identities = 90/192 (46%), Positives = 130/192 (67%), Gaps = 1/192 (0%)
Frame = +2
Query: 176 ERERGITIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEA 355
ERERG+T+DI FETS + ++DAPGH+DFI NMITGTSQAD A+L+V A TGEFE
Sbjct: 247 ERERGVTMDIGRTSFETSHRRIVLLDAPGHKDFISNMITGTSQADAAILVVNATTGEFET 306
Query: 356 GISKNGQTREHALLAFTLGVKQLIVGVNKMDSTEPPYSEPRFEEIKKEVSSYI-KKIGYN 532
G GQT+EHALL +LGV QLIV VNK+D+ + +S+ RF+EIK +S ++ ++ G++
Sbjct: 307 GFENGGQTKEHALLLRSLGVTQLIVAVNKLDTVD--WSQDRFDEIKNNLSVFLTRQAGFS 364
Query: 533 PAAVAFVPISGWHGDNMLEPSTKMPWFKGWQVERKEGKADGKCLIEALDAILPPARPTDK 712
FVP+SG+ G+N+++ ++ W+ DG CL+E +D+ + P P+D
Sbjct: 365 KP--KFVPVSGFTGENLIK-RMELDWY------------DGPCLLELIDSFVAPQPPSDG 409
Query: 713 PLRLPLQDVYKI 748
PLR+ + DV K+
Sbjct: 410 PLRIGISDVLKV 421
Score = 77.8 bits (183), Expect = 8e-15
Identities = 32/57 (56%), Positives = 43/57 (75%)
Frame = +1
Query: 1 VNIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDNTK 171
+N++V+GHVD+GKST GHL++ +D RTI+KF+ EA GK SF YAWVLD T+
Sbjct: 189 INLIVVGHVDAGKSTLMGHLLHDLEVVDSRTIDKFKHEAARNGKASFAYAWVLDETE 245
>U51994-9|AAO21383.1| 267|Caenorhabditis elegans Elongation factor
protein 4, isoformc protein.
Length = 267
Score = 175 bits (426), Expect = 3e-44
Identities = 87/110 (79%), Positives = 94/110 (85%)
Frame = +2
Query: 167 LKAERERGITIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGE 346
LKAERERGITIDIALWKFET+KYY+TIIDAPGHRDFIKNMITGTSQADCAVL+VA GTGE
Sbjct: 63 LKAERERGITIDIALWKFETAKYYITIIDAPGHRDFIKNMITGTSQADCAVLVVACGTGE 122
Query: 347 FEAGISKNGQTREHALLAFTLGVKQLIVGVNKMDSTEPPYSEPRFEEIKK 496
FEAGISKNGQTREHALLA TLGVKQL V+ T P S R + I++
Sbjct: 123 FEAGISKNGQTREHALLAQTLGVKQL---VSLRSPTRSPDSSRRSDTIQR 169
Score = 120 bits (289), Expect = 1e-27
Identities = 54/57 (94%), Positives = 55/57 (96%)
Frame = +1
Query: 1 VNIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDNTK 171
+NIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLD K
Sbjct: 8 INIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLK 64
Score = 55.6 bits (128), Expect = 4e-08
Identities = 35/87 (40%), Positives = 42/87 (48%)
Frame = +3
Query: 486 KSRRKYPHTSRRLATTQLLSLSCPFLDGTETTCWSLQPKCLGSRDGRWSVRKAKLTENAS 665
+S + P +SRR T Q L D TETTC C GSRDG + RK L E S
Sbjct: 152 RSPTRSPDSSRRSDTIQRLFHLSQSPDSTETTCLRSPRTCHGSRDGLLNARKETLPERPS 211
Query: 666 LKLSMPSCHLPAPLTSPCVFPCKTYTK 746
+L PS H A LT VF + T+
Sbjct: 212 SRLLTPSSHHNAQLTDHSVFHSRMCTR 238
>Z92835-1|CAB07395.2| 532|Caenorhabditis elegans Hypothetical
protein H19N07.1 protein.
Length = 532
Score = 149 bits (360), Expect = 3e-36
Identities = 77/191 (40%), Positives = 115/191 (60%), Gaps = 2/191 (1%)
Frame = +2
Query: 176 ERERGITIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEA 355
ERE+G T+++ FET K + TI+DAPGH+ F+ NMI G +QAD AVL+++A GEFE
Sbjct: 168 EREKGKTVEVGRAYFETEKRHFTILDAPGHKSFVPNMIVGANQADLAVLVISARRGEFET 227
Query: 356 GISKNGQTREHALLAFTLGVKQLIVGVNKMDSTEPPYSEPRFEEIKKEVSSYIKKIGYNP 535
G + GQTREH++L T GVK L++ VNKMD + E RF+EI+ +++ +++K+G+NP
Sbjct: 228 GFDRGGQTREHSMLVKTAGVKHLVILVNKMDDPTVKWEEERFKEIEGKLTPFLRKLGFNP 287
Query: 536 AA-VAFVPISGWHGDNMLEPSTKMPWFKGWQVERKEGKADGKCLIEALDAILPP-ARPTD 709
+ +VP SG G + + T W G C IE +D +LP R +
Sbjct: 288 KTDITYVPCSGLTGAFIKDRPTGSE--GNWY--------SGPCFIEFIDVLLPSYKRDFN 337
Query: 710 KPLRLPLQDVY 742
P+R + + Y
Sbjct: 338 GPVRCTVAEKY 348
Score = 68.1 bits (159), Expect = 6e-12
Identities = 27/54 (50%), Positives = 42/54 (77%)
Frame = +1
Query: 1 VNIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLD 162
+N+V +GHVD+GKST G L++ G +DKRT+EK+E+EA+E G+ S+ +W +D
Sbjct: 110 INMVFVGHVDAGKSTIGGQLMFLTGMVDKRTLEKYEREAKEKGRESWYLSWCMD 163
>U51994-8|AAO21382.1| 77|Caenorhabditis elegans Elongation factor
protein 4, isoformb protein.
Length = 77
Score = 120 bits (289), Expect = 1e-27
Identities = 54/57 (94%), Positives = 55/57 (96%)
Frame = +1
Query: 1 VNIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDNTK 171
+NIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLD K
Sbjct: 8 INIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLK 64
>U80437-9|AAN84843.1| 439|Caenorhabditis elegans Tu elongation
factor (ef-tu), mitochondrialprotein 2 protein.
Length = 439
Score = 84.6 bits (200), Expect = 7e-17
Identities = 50/128 (39%), Positives = 71/128 (55%)
Frame = +2
Query: 170 KAERERGITIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEF 349
K E++RGITI++A +E+ + D PGH DFIKNMI GTSQ D AVL++AA G
Sbjct: 87 KEEKKRGITINVAHIGYESPLRRYSHTDCPGHSDFIKNMICGTSQMDVAVLVIAATDGVM 146
Query: 350 EAGISKNGQTREHALLAFTLGVKQLIVGVNKMDSTEPPYSEPRFEEIKKEVSSYIKKIGY 529
E QT+EH +LA +GVK + + +NK D E E + ++ E + G+
Sbjct: 147 E-------QTKEHLILAKQVGVKNMAIFINKADLVE----EDDLDLVEMEARELLSLHGF 195
Query: 530 NPAAVAFV 553
N A +
Sbjct: 196 NGDATPVI 203
>AB010028-1|BAA31345.1| 439|Caenorhabditis elegans mitochondrial
elongation factorTu homologue protein.
Length = 439
Score = 84.6 bits (200), Expect = 7e-17
Identities = 50/128 (39%), Positives = 71/128 (55%)
Frame = +2
Query: 170 KAERERGITIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEF 349
K E++RGITI++A +E+ + D PGH DFIKNMI GTSQ D AVL++AA G
Sbjct: 87 KEEKKRGITINVAHIGYESPLRRYSHTDCPGHSDFIKNMICGTSQMDVAVLVIAATDGVM 146
Query: 350 EAGISKNGQTREHALLAFTLGVKQLIVGVNKMDSTEPPYSEPRFEEIKKEVSSYIKKIGY 529
E QT+EH +LA +GVK + + +NK D E E + ++ E + G+
Sbjct: 147 E-------QTKEHLILAKQVGVKNMAIFINKADLVE----EDDLDLVEMEARELLSLHGF 195
Query: 530 NPAAVAFV 553
N A +
Sbjct: 196 NGDATPVI 203
>D38472-1|BAA07492.1| 495|Caenorhabditis elegans elongation factor
Tu homologueprecursor protein.
Length = 495
Score = 82.6 bits (195), Expect = 3e-16
Identities = 50/120 (41%), Positives = 73/120 (60%), Gaps = 2/120 (1%)
Frame = +2
Query: 176 ERERGITIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEA 355
E+ RGITI+ ++ET+K + ID PGH D+IKNMITG +Q + A+L+VAA G
Sbjct: 93 EKARGITINAFHLEYETAKRHYAHIDCPGHADYIKNMITGAAQMEGAILVVAATDGPMP- 151
Query: 356 GISKNGQTREHALLAFTLGV--KQLIVGVNKMDSTEPPYSEPRFEEIKKEVSSYIKKIGY 529
QTREH LLA +GV ++V +NK+D E P +E R E ++ ++ + + GY
Sbjct: 152 ------QTREHLLLARQVGVPLDNIVVFMNKVD--EVPDAETR-ELVEMDIREQLNEFGY 202
Score = 28.3 bits (60), Expect = 6.1
Identities = 15/48 (31%), Positives = 23/48 (47%), Gaps = 3/48 (6%)
Frame = +1
Query: 1 VNIVVIGHVDSGKSTTTG---HLIYKCGGIDKRTIEKFEKEAQEMGKG 135
+N+ IGHVD GK+T T ++ G R E + +E +G
Sbjct: 50 LNVGTIGHVDHGKTTLTSAITKILATSKGAKYRKYEDIDNAPEEKARG 97
>D38471-1|BAA07491.1| 496|Caenorhabditis elegans elongation factor
Tu homologueprecursor protein.
Length = 496
Score = 82.6 bits (195), Expect = 3e-16
Identities = 50/120 (41%), Positives = 73/120 (60%), Gaps = 2/120 (1%)
Frame = +2
Query: 176 ERERGITIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEA 355
E+ RGITI+ ++ET+K + ID PGH D+IKNMITG +Q + A+L+VAA G
Sbjct: 94 EKARGITINAFHLEYETAKRHYAHIDCPGHADYIKNMITGAAQMEGAILVVAATDGPMP- 152
Query: 356 GISKNGQTREHALLAFTLGV--KQLIVGVNKMDSTEPPYSEPRFEEIKKEVSSYIKKIGY 529
QTREH LLA +GV ++V +NK+D E P +E R E ++ ++ + + GY
Sbjct: 153 ------QTREHLLLARQVGVPLDNIVVFMNKVD--EVPDAETR-ELVEMDIREQLNEFGY 203
Score = 28.3 bits (60), Expect = 6.1
Identities = 15/48 (31%), Positives = 23/48 (47%), Gaps = 3/48 (6%)
Frame = +1
Query: 1 VNIVVIGHVDSGKSTTTG---HLIYKCGGIDKRTIEKFEKEAQEMGKG 135
+N+ IGHVD GK+T T ++ G R E + +E +G
Sbjct: 51 LNVGTIGHVDHGKTTLTSAITKILATSKGAKYRKYEDIDNAPEEKARG 98
>AC024859-25|AAK29979.1| 496|Caenorhabditis elegans Tu elongation
factor (ef-tu), mitochondrialprotein 1 protein.
Length = 496
Score = 82.6 bits (195), Expect = 3e-16
Identities = 50/120 (41%), Positives = 73/120 (60%), Gaps = 2/120 (1%)
Frame = +2
Query: 176 ERERGITIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEA 355
E+ RGITI+ ++ET+K + ID PGH D+IKNMITG +Q + A+L+VAA G
Sbjct: 94 EKARGITINAFHLEYETAKRHYAHIDCPGHADYIKNMITGAAQMEGAILVVAATDGPMP- 152
Query: 356 GISKNGQTREHALLAFTLGV--KQLIVGVNKMDSTEPPYSEPRFEEIKKEVSSYIKKIGY 529
QTREH LLA +GV ++V +NK+D E P +E R E ++ ++ + + GY
Sbjct: 153 ------QTREHLLLARQVGVPLDNIVVFMNKVD--EVPDAETR-ELVEMDIREQLNEFGY 203
Score = 28.3 bits (60), Expect = 6.1
Identities = 15/48 (31%), Positives = 23/48 (47%), Gaps = 3/48 (6%)
Frame = +1
Query: 1 VNIVVIGHVDSGKSTTTG---HLIYKCGGIDKRTIEKFEKEAQEMGKG 135
+N+ IGHVD GK+T T ++ G R E + +E +G
Sbjct: 51 LNVGTIGHVDHGKTTLTSAITKILATSKGAKYRKYEDIDNAPEEKARG 98
>L13200-4|AAA28191.2| 645|Caenorhabditis elegans Hypothetical
protein ZK1236.1 protein.
Length = 645
Score = 46.8 bits (106), Expect = 2e-05
Identities = 32/94 (34%), Positives = 45/94 (47%)
Frame = +2
Query: 167 LKAERERGITIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGE 346
L+ ERERGIT+ Y + +ID PGH DF + + D +L+VAA G
Sbjct: 80 LQVERERGITVKAQTAALRHRGYLLNLIDTPGHVDFSAEVSRSLAVCDGILLLVAANQG- 138
Query: 347 FEAGISKNGQTREHALLAFTLGVKQLIVGVNKMD 448
QT + LAF + Q+I +NK+D
Sbjct: 139 ------VQAQTIANFWLAFEKNI-QIIPVINKID 165
Score = 32.3 bits (70), Expect = 0.38
Identities = 14/42 (33%), Positives = 23/42 (54%), Gaps = 3/42 (7%)
Frame = +1
Query: 4 NIVVIGHVDSGKSTTTGHLIYKCGGI---DKRTIEKFEKEAQ 120
N ++ HVD GKST L+ CG + K+ ++K + E +
Sbjct: 44 NFGIVAHVDHGKSTLADRLLEMCGAVPPGQKQMLDKLQVERE 85
>Z99709-7|CAB16862.2| 500|Caenorhabditis elegans Hypothetical
protein C47B2.7b protein.
Length = 500
Score = 44.0 bits (99), Expect = 1e-04
Identities = 34/119 (28%), Positives = 57/119 (47%), Gaps = 2/119 (1%)
Frame = +2
Query: 239 VTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHALLAFTLGVK 418
+ +ID PGH I+ ++ ++ D A++I+ + AGI QT EH LLA
Sbjct: 74 LALIDCPGHSGLIRAVLAASTVFDMAIVII-----DVVAGIQP--QTAEHLLLASKFCPN 126
Query: 419 QLIVGVNKMDSTEPPYSEPRFEEIKKEVSSYIKKIGY--NPAAVAFVPISGWHGDNMLE 589
++I+ +NK D E + + E K+V +K +G N V G+ + ML+
Sbjct: 127 RVIIVLNKCDLAE----KSKISESAKKVRKGLKSMGVDENSPIVEMSLADGYFKEEMLQ 181
Score = 28.3 bits (60), Expect = 6.1
Identities = 10/17 (58%), Positives = 15/17 (88%)
Frame = +1
Query: 1 VNIVVIGHVDSGKSTTT 51
+N+ ++GHVDSGK+T T
Sbjct: 14 LNLGILGHVDSGKTTLT 30
>Z70780-15|CAA94822.2| 702|Caenorhabditis elegans Hypothetical
protein F46B6.6a protein.
Length = 702
Score = 43.6 bits (98), Expect = 2e-04
Identities = 34/88 (38%), Positives = 41/88 (46%), Gaps = 1/88 (1%)
Frame = +2
Query: 188 GITIDIALWKFETSK-YYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGIS 364
GIT I + E +K VT +D PGH F G AD VL+VAA G E
Sbjct: 188 GITQHIGAFSVELTKGRRVTFLDTPGHAAFASMRARGAKGADIVVLVVAADDGVKE---- 243
Query: 365 KNGQTREHALLAFTLGVKQLIVGVNKMD 448
QT + A V QL+V VNK+D
Sbjct: 244 ---QTAQSIKFAKDANV-QLVVAVNKID 267
>Z81519-1|CAB04216.1| 750|Caenorhabditis elegans Hypothetical
protein F29C12.4 protein.
Length = 750
Score = 38.3 bits (85), Expect = 0.006
Identities = 31/91 (34%), Positives = 40/91 (43%)
Frame = +2
Query: 176 ERERGITIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEA 355
ER+RGITI A + + IID PGH DF + D AVL++ G G
Sbjct: 93 ERQRGITIQSAATYVDWHGTNINIIDTPGHVDFTVEVERALRVLDGAVLVL-CGVG---- 147
Query: 356 GISKNGQTREHALLAFTLGVKQLIVGVNKMD 448
G+ T L + + I VNKMD
Sbjct: 148 GVQSQTFTVNRQLARYNV---PFICFVNKMD 175
Score = 33.1 bits (72), Expect = 0.21
Identities = 13/27 (48%), Positives = 18/27 (66%)
Frame = +1
Query: 4 NIVVIGHVDSGKSTTTGHLIYKCGGID 84
NI + H+DSGK+T T ++Y G ID
Sbjct: 46 NIGISAHIDSGKTTVTERILYYAGRID 72
>AC025716-9|AAK39619.1| 469|Caenorhabditis elegans Hypothetical
protein Y39G10AR.8 protein.
Length = 469
Score = 37.5 bits (83), Expect = 0.010
Identities = 22/85 (25%), Positives = 38/85 (44%)
Frame = +2
Query: 236 YVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHALLAFTLGV 415
+V+ +D PGH + M+ G + D A L+VA QT EH + +
Sbjct: 128 HVSFVDCPGHDILMATMLNGAAVMDAAFLLVAGNEP------CPQPQTSEHLAAVEIMQL 181
Query: 416 KQLIVGVNKMDSTEPPYSEPRFEEI 490
L++ NK+D + + +E+I
Sbjct: 182 NHLMILQNKVDIIKESQARENYEQI 206
>AC006714-2|AAK29716.2| 689|Caenorhabditis elegans Hypothetical
protein Y119D3B.14 protein.
Length = 689
Score = 37.5 bits (83), Expect = 0.010
Identities = 19/59 (32%), Positives = 28/59 (47%)
Frame = +2
Query: 167 LKAERERGITIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTG 343
L ERERGIT+ A + + + +ID PGH DF + D V+++ G
Sbjct: 68 LDIERERGITVQSAAVNLDWKGHRINLIDTPGHVDFRVEVERCVRVLDGIVVVIDGSAG 126
Score = 34.3 bits (75), Expect = 0.093
Identities = 15/26 (57%), Positives = 18/26 (69%)
Frame = +1
Query: 4 NIVVIGHVDSGKSTTTGHLIYKCGGI 81
NI VI HVD+GK+T T L+Y G I
Sbjct: 27 NIGVIAHVDAGKTTVTERLLYLAGAI 52
>AC024817-55|AAF59563.3| 366|Caenorhabditis elegans Hypothetical
protein Y54G2A.28 protein.
Length = 366
Score = 33.5 bits (73), Expect = 0.16
Identities = 18/43 (41%), Positives = 24/43 (55%)
Frame = -2
Query: 441 LFTPTMSCLTPRVKASKACSRV*PFLEIPASNSPVPAATMSTA 313
LF PT+SC+ + AS S P + PA N VP AT+S +
Sbjct: 13 LFDPTLSCMATQNSASATLSCANPTVAAPA-NDDVPEATLSVS 54
>U50193-2|AAA91248.1| 974|Caenorhabditis elegans Elongation factor
protein 1 protein.
Length = 974
Score = 33.1 bits (72), Expect = 0.21
Identities = 22/65 (33%), Positives = 30/65 (46%), Gaps = 5/65 (7%)
Frame = +2
Query: 164 ILKAERERGITI-----DIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIV 328
IL E++RG +I I + Y + IID PGH +F M AD V++V
Sbjct: 173 ILFIEKQRGCSIKSQPVSIVAQDSRSKSYLLNIIDTPGHVNFSDEMTASYRLADGVVVMV 232
Query: 329 AAGTG 343
A G
Sbjct: 233 DAHEG 237
>M86958-1|AAA21824.1| 849|Caenorhabditis elegans eft-1 protein.
Length = 849
Score = 33.1 bits (72), Expect = 0.21
Identities = 22/65 (33%), Positives = 30/65 (46%), Gaps = 5/65 (7%)
Frame = +2
Query: 164 ILKAERERGITI-----DIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIV 328
IL E++RG +I I + Y + IID PGH +F M AD V++V
Sbjct: 48 ILFIEKQRGCSIKSQPVSIVAQDSRSKSYLLNIIDTPGHVNFSDEMTASYRLADGVVVMV 107
Query: 329 AAGTG 343
A G
Sbjct: 108 DAHEG 112
>Z83235-9|CAI79209.1| 705|Caenorhabditis elegans Hypothetical
protein K10C3.5b protein.
Length = 705
Score = 32.3 bits (70), Expect = 0.38
Identities = 17/60 (28%), Positives = 30/60 (50%)
Frame = +2
Query: 149 LGYWTILKAERERGITIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIV 328
L Y + E+ RGIT+ + + +ID+PGH DF + + +D A+L++
Sbjct: 55 LRYMDSREDEQTRGITMKSSGISLLCEPLLINLIDSPGHVDFSGEVTSALILSDIALLLI 114
>Z83235-8|CAB05774.2| 894|Caenorhabditis elegans Hypothetical
protein K10C3.5a protein.
Length = 894
Score = 32.3 bits (70), Expect = 0.38
Identities = 17/60 (28%), Positives = 30/60 (50%)
Frame = +2
Query: 149 LGYWTILKAERERGITIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIV 328
L Y + E+ RGIT+ + + +ID+PGH DF + + +D A+L++
Sbjct: 55 LRYMDSREDEQTRGITMKSSGISLLCEPLLINLIDSPGHVDFSGEVTSALILSDIALLLI 114
>DQ867020-1|ABI49097.1| 1074|Caenorhabditis elegans eukaryotic
translation initiationfactor eIF5B protein.
Length = 1074
Score = 32.3 bits (70), Expect = 0.38
Identities = 25/78 (32%), Positives = 35/78 (44%)
Frame = +2
Query: 245 IIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHALLAFTLGVKQL 424
IID PGH F G+S D A+L+V + G+ QT E +L G
Sbjct: 553 IIDTPGHESFSNLRTRGSSLCDFAILVV-----DIMHGLEP--QTIE-SLKLLIKGKTPF 604
Query: 425 IVGVNKMDSTEPPYSEPR 478
++ +NK+D S PR
Sbjct: 605 VIALNKIDRLYEYESNPR 622
>Z81068-5|CAB02985.1| 852|Caenorhabditis elegans Hypothetical
protein F25H5.4 protein.
Length = 852
Score = 31.5 bits (68), Expect = 0.66
Identities = 14/24 (58%), Positives = 16/24 (66%)
Frame = +1
Query: 4 NIVVIGHVDSGKSTTTGHLIYKCG 75
N+ VI HVD GKST T L+ K G
Sbjct: 21 NMSVIAHVDHGKSTLTDSLVSKAG 44
Score = 29.9 bits (64), Expect = 2.0
Identities = 13/50 (26%), Positives = 27/50 (54%)
Frame = +2
Query: 194 TIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTG 343
T+++ K + + + + +ID+PGH DF + D A+++V +G
Sbjct: 97 TVEVDGKKEKYNGFLINLIDSPGHVDFSSEVTAALRVTDGALVVVDCVSG 146
>M86959-1|AAD03339.1| 852|Caenorhabditis elegans elongation
factor protein.
Length = 852
Score = 31.5 bits (68), Expect = 0.66
Identities = 14/24 (58%), Positives = 16/24 (66%)
Frame = +1
Query: 4 NIVVIGHVDSGKSTTTGHLIYKCG 75
N+ VI HVD GKST T L+ K G
Sbjct: 21 NMSVIAHVDHGKSTLTDSLVSKAG 44
Score = 30.3 bits (65), Expect = 1.5
Identities = 13/50 (26%), Positives = 27/50 (54%)
Frame = +2
Query: 194 TIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTG 343
T+++ K + + + + +ID+PGH DF + D A+++V +G
Sbjct: 97 TVEVDGKKEKYNGFLINLIDSPGHVDFSSEVTAALGVTDGALVVVDCVSG 146
>AL008869-2|CAC42315.1| 810|Caenorhabditis elegans Hypothetical
protein H30A04.1b protein.
Length = 810
Score = 29.5 bits (63), Expect = 2.6
Identities = 12/21 (57%), Positives = 13/21 (61%)
Frame = +3
Query: 504 PHTSRRLATTQLLSLSCPFLD 566
PH SR T L+ SCPFLD
Sbjct: 158 PHLSRNSFTANALNCSCPFLD 178
>AL008869-1|CAA15516.1| 808|Caenorhabditis elegans Hypothetical
protein H30A04.1a protein.
Length = 808
Score = 29.5 bits (63), Expect = 2.6
Identities = 12/21 (57%), Positives = 13/21 (61%)
Frame = +3
Query: 504 PHTSRRLATTQLLSLSCPFLD 566
PH SR T L+ SCPFLD
Sbjct: 158 PHLSRNSFTANALNCSCPFLD 178
>AB032749-1|BAA92158.1| 810|Caenorhabditis elegans EAT-20B protein.
Length = 810
Score = 29.5 bits (63), Expect = 2.6
Identities = 12/21 (57%), Positives = 13/21 (61%)
Frame = +3
Query: 504 PHTSRRLATTQLLSLSCPFLD 566
PH SR T L+ SCPFLD
Sbjct: 158 PHLSRNSFTANALNCSCPFLD 178
>AB032748-1|BAA92157.1| 808|Caenorhabditis elegans EAT-20A protein.
Length = 808
Score = 29.5 bits (63), Expect = 2.6
Identities = 12/21 (57%), Positives = 13/21 (61%)
Frame = +3
Query: 504 PHTSRRLATTQLLSLSCPFLD 566
PH SR T L+ SCPFLD
Sbjct: 158 PHLSRNSFTANALNCSCPFLD 178
>AF067211-3|ABC71845.1| 720|Caenorhabditis elegans Hypothetical
protein B0205.1b protein.
Length = 720
Score = 29.1 bits (62), Expect = 3.5
Identities = 34/136 (25%), Positives = 56/136 (41%), Gaps = 14/136 (10%)
Frame = +2
Query: 269 DFIKNMI-TGTSQADCAVLIV--AAGTGEFEAGISKNGQTREHALLAF-TLGVKQLIVGV 436
DF+ MI +G Q D IV + G+ E ++G R + + TLG ++ ++
Sbjct: 445 DFLAQMIQSGAVQLDENYRIVRYTSNNGKVELSEKRSGVKRRSSTKSSKTLGKRRQVIEK 504
Query: 437 NKMDSTEP---------PYSEPRFEEIKKEVSSYIKKIGYNPAAVAFVPISGWH-GDNML 586
D EP P EP +EEI + Y + + P + PI H +
Sbjct: 505 ELSDLDEPEFVGIMHGYPKQEPVYEEIINQDMRYNNEDPHIPPEIEQFPIQAVHLEEPKF 564
Query: 587 EPSTKMPWFKGWQVER 634
+P + M +G +R
Sbjct: 565 DPISSMNIGRGTLAQR 580
>AF067211-2|AAC16990.3| 745|Caenorhabditis elegans Hypothetical
protein B0205.1a protein.
Length = 745
Score = 29.1 bits (62), Expect = 3.5
Identities = 34/136 (25%), Positives = 56/136 (41%), Gaps = 14/136 (10%)
Frame = +2
Query: 269 DFIKNMI-TGTSQADCAVLIV--AAGTGEFEAGISKNGQTREHALLAF-TLGVKQLIVGV 436
DF+ MI +G Q D IV + G+ E ++G R + + TLG ++ ++
Sbjct: 470 DFLAQMIQSGAVQLDENYRIVRYTSNNGKVELSEKRSGVKRRSSTKSSKTLGKRRQVIEK 529
Query: 437 NKMDSTEP---------PYSEPRFEEIKKEVSSYIKKIGYNPAAVAFVPISGWH-GDNML 586
D EP P EP +EEI + Y + + P + PI H +
Sbjct: 530 ELSDLDEPEFVGIMHGYPKQEPVYEEIINQDMRYNNEDPHIPPEIEQFPIQAVHLEEPKF 589
Query: 587 EPSTKMPWFKGWQVER 634
+P + M +G +R
Sbjct: 590 DPISSMNIGRGTLAQR 605
>Z68296-5|CAD59142.2| 1677|Caenorhabditis elegans Hypothetical
protein C46C2.1b protein.
Length = 1677
Score = 28.7 bits (61), Expect = 4.6
Identities = 17/38 (44%), Positives = 22/38 (57%), Gaps = 1/38 (2%)
Frame = +1
Query: 79 IDKRTIEKFEKEAQEMGKGSFKYAW-VLDNTKG*A*AW 189
IDK +F K +E+G+GSFK + LD G A AW
Sbjct: 323 IDKSKNGRFLKFDEELGRGSFKTVFRGLDTETGVAVAW 360
>Z68296-4|CAA92591.3| 1838|Caenorhabditis elegans Hypothetical
protein C46C2.1a protein.
Length = 1838
Score = 28.7 bits (61), Expect = 4.6
Identities = 17/38 (44%), Positives = 22/38 (57%), Gaps = 1/38 (2%)
Frame = +1
Query: 79 IDKRTIEKFEKEAQEMGKGSFKYAW-VLDNTKG*A*AW 189
IDK +F K +E+G+GSFK + LD G A AW
Sbjct: 323 IDKSKNGRFLKFDEELGRGSFKTVFRGLDTETGVAVAW 360
>Z99709-6|CAB16863.1| 459|Caenorhabditis elegans Hypothetical
protein C47B2.7a protein.
Length = 459
Score = 28.3 bits (60), Expect = 6.1
Identities = 10/17 (58%), Positives = 15/17 (88%)
Frame = +1
Query: 1 VNIVVIGHVDSGKSTTT 51
+N+ ++GHVDSGK+T T
Sbjct: 14 LNLGILGHVDSGKTTLT 30
>Z75710-2|CAB00025.2| 381|Caenorhabditis elegans Hypothetical
protein D1081.4 protein.
Length = 381
Score = 27.9 bits (59), Expect = 8.1
Identities = 17/34 (50%), Positives = 22/34 (64%), Gaps = 2/34 (5%)
Frame = +2
Query: 239 VTIIDAPGHRDFI--KNMITGTSQADCAVLIVAA 334
V IID+ G RDFI KN+ GT AD +++ AA
Sbjct: 73 VQIIDSSGSRDFIGMKNLYIGT--ADAFLVVFAA 104
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,572,014
Number of Sequences: 27780
Number of extensions: 414784
Number of successful extensions: 1351
Number of sequences better than 10.0: 37
Number of HSP's better than 10.0 without gapping: 1222
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1337
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1766990064
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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