Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0859
         (725 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM292345-1|CAL23157.2|  384|Tribolium castaneum gustatory recept...    27   0.12 
DQ414247-1|ABD63009.2|  414|Tribolium castaneum paired protein.        23   2.5  
AM292322-1|CAL23134.1|  373|Tribolium castaneum gustatory recept...    22   5.8  
DQ157471-1|AAZ85125.1| 1639|Tribolium castaneum Down Syndrome ad...    21   7.7  

>AM292345-1|CAL23157.2|  384|Tribolium castaneum gustatory receptor
           candidate 24 protein.
          Length = 384

 Score = 27.5 bits (58), Expect = 0.12
 Identities = 14/42 (33%), Positives = 23/42 (54%)
 Frame = +2

Query: 2   YQKLITAVTSLVQFLRTQLNEFGIINTTPDFANFFAAPSSIK 127
           +QKL     + ++ L  Q   FG++  TPD + F   PSS++
Sbjct: 4   FQKLYQKFVNSIRILLFQSRIFGLVTFTPDRSKF--RPSSLR 43


>DQ414247-1|ABD63009.2|  414|Tribolium castaneum paired protein.
          Length = 414

 Score = 23.0 bits (47), Expect = 2.5
 Identities = 8/17 (47%), Positives = 11/17 (64%)
 Frame = +3

Query: 396 FKTENPRLLFWKIRAEL 446
           +K ENP +  W+IR  L
Sbjct: 124 YKRENPSIFSWEIRDRL 140


>AM292322-1|CAL23134.1|  373|Tribolium castaneum gustatory receptor
           candidate 1 protein.
          Length = 373

 Score = 21.8 bits (44), Expect = 5.8
 Identities = 9/19 (47%), Positives = 11/19 (57%)
 Frame = +2

Query: 665 TVTTSLTMTSGYLMGKICT 721
           TV    T T   ++GKICT
Sbjct: 206 TVKNFATKTQSAVLGKICT 224


>DQ157471-1|AAZ85125.1| 1639|Tribolium castaneum Down Syndrome
           adhesion molecule splicevariant 3.12.3.1 protein.
          Length = 1639

 Score = 21.4 bits (43), Expect = 7.7
 Identities = 10/42 (23%), Positives = 24/42 (57%), Gaps = 4/42 (9%)
 Frame = +2

Query: 533 RQPSNRIGVGSLYGLMVFCTS----KLEVCYIEANGFYLGNL 646
           R+P NRI   +  G +V C++      ++ ++ ++G  +G++
Sbjct: 27  REPPNRIDFSNTTGAVVECSAHGNPTPDIIWVRSDGTAVGDV 68


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 154,541
Number of Sequences: 336
Number of extensions: 3131
Number of successful extensions: 6
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 19363530
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)