Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0859
         (725 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1348.08c |||glycoprotein |Schizosaccharomyces pombe|chr 2|||...    29   0.68 
SPAC977.07c |||glycoprotein |Schizosaccharomyces pombe|chr 1|||M...    29   0.68 
SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||...    28   1.2  
SPCC338.03c |||dubious|Schizosaccharomyces pombe|chr 3|||Manual        28   1.6  
SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family ...    27   3.6  
SPBP35G2.06c |nup131|Nup133a|nucleoporin Nup131|Schizosaccharomy...    26   4.8  
SPAC26A3.09c |rga2||GTPase activating protein Rga2|Schizosacchar...    25   8.3  

>SPBC1348.08c |||glycoprotein |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 416

 Score = 29.1 bits (62), Expect = 0.68
 Identities = 22/74 (29%), Positives = 34/74 (45%), Gaps = 6/74 (8%)
 Frame = +2

Query: 518 DVFAFRQPSNRIGVGSLYGLMVFCTSK------LEVCYIEANGFYLGNLXAVFSETVTTS 679
           D +++   S  +G+G++ G+  F          L V ++ ANG Y+G     F+   T  
Sbjct: 324 DAYSYWHESPNMGLGTV-GMGNFTVGNYPEGYFLPVRFVVANGAYIGGFDFYFTSDSTGP 382

Query: 680 LTMTSGYLMGKICT 721
           L  TS Y   K CT
Sbjct: 383 LATTS-YSYTKTCT 395


>SPAC977.07c |||glycoprotein |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 416

 Score = 29.1 bits (62), Expect = 0.68
 Identities = 22/74 (29%), Positives = 34/74 (45%), Gaps = 6/74 (8%)
 Frame = +2

Query: 518 DVFAFRQPSNRIGVGSLYGLMVFCTSK------LEVCYIEANGFYLGNLXAVFSETVTTS 679
           D +++   S  +G+G++ G+  F          L V ++ ANG Y+G     F+   T  
Sbjct: 324 DAYSYWHESPNMGLGTV-GMGNFTVGNYPEGYFLPVRFVVANGAYIGGFDFYFTSDSTGP 382

Query: 680 LTMTSGYLMGKICT 721
           L  TS Y   K CT
Sbjct: 383 LATTS-YSYTKTCT 395


>SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 534

 Score = 28.3 bits (60), Expect = 1.2
 Identities = 19/69 (27%), Positives = 38/69 (55%)
 Frame = +3

Query: 162 ASSSSCTPVISLTSWPFSEPTDLVASTH*TKCRLSSALLL*TVNTSSRSTVATSPSQETV 341
           +SSSS +P  + ++   S  +    S+  +   +SS+    +  TSS ST+++S S  + 
Sbjct: 293 SSSSSSSPTSTSSTISSSSSSSSSFSSTLSSSSMSSSSSFSSSPTSSSSTISSSSSSPSS 352

Query: 342 ATYWRTTTS 368
           +++  TT+S
Sbjct: 353 SSFSSTTSS 361


>SPCC338.03c |||dubious|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 141

 Score = 27.9 bits (59), Expect = 1.6
 Identities = 19/67 (28%), Positives = 31/67 (46%), Gaps = 1/67 (1%)
 Frame = +2

Query: 446 IIELKENGQAILNGASKGFPIIEKDVFAFRQP-SNRIGVGSLYGLMVFCTSKLEVCYIEA 622
           ++ +  NG+ +L+ AS  F  + K V     P  N   +       +FCTS L  CYI++
Sbjct: 65  MVSVSRNGKQLLSEAS--FFRLGKHVHLNFLPFENTFEMALRNDFQIFCTSILFTCYIQS 122

Query: 623 NGFYLGN 643
               + N
Sbjct: 123 FSLLISN 129


>SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1420

 Score = 26.6 bits (56), Expect = 3.6
 Identities = 10/28 (35%), Positives = 17/28 (60%)
 Frame = +2

Query: 200 ILALLRAYRPRSINPLDEVPSKLRAVVV 283
           I  +L +Y P+ INP +E+P   R + +
Sbjct: 9   IYKVLYSYEPQEINPGEEIPENEREISI 36


>SPBP35G2.06c |nup131|Nup133a|nucleoporin Nup131|Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 1142

 Score = 26.2 bits (55), Expect = 4.8
 Identities = 18/62 (29%), Positives = 30/62 (48%), Gaps = 6/62 (9%)
 Frame = -2

Query: 556  TDSVAWLTESEHILFDDRESFGSSVQNSLSIFF------QFDDSSALIFQNKSLGFSVLK 395
            +D + WL   EH + D+ + +  S +N L   +      Q +D    +F+ K + FSVL 
Sbjct: 1065 SDFLIWLQHMEHNIHDESKHYLKSEKNFLQSVYSSLSESQVEDYQMELFREKQI-FSVLC 1123

Query: 394  LD 389
             D
Sbjct: 1124 KD 1125


>SPAC26A3.09c |rga2||GTPase activating protein
           Rga2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1275

 Score = 25.4 bits (53), Expect = 8.3
 Identities = 15/54 (27%), Positives = 26/54 (48%), Gaps = 4/54 (7%)
 Frame = +2

Query: 29  SLVQFLRTQLNEFGIINTTPDF----ANFFAAPSSIKSAPSLAGEATWSFFKQL 178
           SLV++LR +L +  + + +PDF      F    S+     S   +  WSF + +
Sbjct: 582 SLVRYLRFELMKTSLASLSPDFDCIGLQFVVGVSASSHLASQWKDEVWSFTRSI 635


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,818,876
Number of Sequences: 5004
Number of extensions: 57902
Number of successful extensions: 197
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 188
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 197
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 341222980
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)