Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brS-0859
(725 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_05_0167 - 26415319-26415494,26415591-26415840,26415909-264159... 38 0.006
04_03_0660 + 18463011-18463322,18463424-18463516,18464500-184646... 30 1.6
02_02_0007 + 6056281-6057024,6057273-6057539,6057622-6057765,605... 30 2.2
03_05_0573 - 25737373-25737774 29 3.8
10_08_0392 + 17500748-17500877,17501006-17501280,17501321-175013... 29 5.0
05_05_0114 - 22488172-22488279,22488414-22488511,22488616-224887... 29 5.0
01_06_1732 - 39531577-39531726,39531809-39531925,39532175-395323... 28 6.6
01_06_0872 + 32609792-32610178,32611262-32611387,32611477-326115... 28 6.6
11_04_0307 + 16185405-16185713,16185847-16185942,16186626-161867... 28 8.7
05_04_0319 + 20171486-20171800,20171882-20171956,20172160-201721... 28 8.7
03_02_0663 + 10256898-10258915,10259162-10259248,10259463-102597... 28 8.7
>02_05_0167 -
26415319-26415494,26415591-26415840,26415909-26415974,
26416457-26416600,26416813-26416868,26416966-26417101,
26417190-26417277,26417379-26417482,26418515-26419180,
26419337-26419432,26419974-26420242,26420334-26420489,
26421153-26421192
Length = 748
Score = 38.3 bits (85), Expect = 0.006
Identities = 19/52 (36%), Positives = 29/52 (55%)
Frame = -2
Query: 202 DVREITGVQLLEEAPRCLSSKRRSGLN*AWSSEEVRKVGRRVDNAKFIQLSP 47
DV ++GV L EE + LS+ + +W+SEE RK+ + D F+Q P
Sbjct: 463 DVTAVSGVNLREEEEQLLSAPKEE----SWASEEARKIAQEEDGKLFLQKGP 510
>04_03_0660 +
18463011-18463322,18463424-18463516,18464500-18464607,
18464892-18465044,18465256-18465354,18465443-18465571,
18465987-18466166,18466208-18466246,18466247-18466363,
18466445-18466609
Length = 464
Score = 30.3 bits (65), Expect = 1.6
Identities = 14/37 (37%), Positives = 24/37 (64%)
Frame = +2
Query: 170 KQLYSGDFPDILALLRAYRPRSINPLDEVPSKLRAVV 280
++L +GDF L LL++Y P +I+ L + +KLR +
Sbjct: 426 RRLLAGDFTANLKLLQSYPPTNIDHLLHIANKLRGPI 462
>02_02_0007 +
6056281-6057024,6057273-6057539,6057622-6057765,
6057844-6058191,6058713-6059102
Length = 630
Score = 29.9 bits (64), Expect = 2.2
Identities = 15/37 (40%), Positives = 18/37 (48%)
Frame = +1
Query: 295 HLHVRRSPPHLPRKLSLRIGARPRR*KLHAANPTSKR 405
H H +PPHL R+ + A P R LH PT R
Sbjct: 20 HRHHPAAPPHLLRQRRGSVAATPLRLGLHLPTPTPLR 56
>03_05_0573 - 25737373-25737774
Length = 133
Score = 29.1 bits (62), Expect = 3.8
Identities = 20/57 (35%), Positives = 26/57 (45%), Gaps = 4/57 (7%)
Frame = +1
Query: 295 HLHVRRSPPHLPRKL----SLRIGARPRR*KLHAANPTSKRKTQGSYFGR*ERSYHR 453
H RR PP LPR + S G RP R + A G+ FG+ +R +HR
Sbjct: 53 HRLQRRDPPLLPRLVRWPPSSSPGVRPGRATVEAVAAEEAVVGSGASFGQAQRRHHR 109
>10_08_0392 +
17500748-17500877,17501006-17501280,17501321-17501388,
17501516-17501632,17501802-17501943,17502622-17502912,
17503507-17503650
Length = 388
Score = 28.7 bits (61), Expect = 5.0
Identities = 18/66 (27%), Positives = 30/66 (45%), Gaps = 6/66 (9%)
Frame = +2
Query: 542 SNRIGVGSLYGLMVFCTSKLEVC---YIEANGFYLG---NLXAVFSETVTTSLTMTSGYL 703
++R+GV G+ V + + +C I GF+ N+ F + T+TS +L
Sbjct: 9 ASRLGVAGALGMSVTSSVAIVICNKYLISTLGFFFEMFLNVILCFGNVENAATTLTSWHL 68
Query: 704 MGKICT 721
M CT
Sbjct: 69 MVTFCT 74
>05_05_0114 -
22488172-22488279,22488414-22488511,22488616-22488784,
22489310-22489377,22490485-22490521,22490660-22490741,
22490845-22490903
Length = 206
Score = 28.7 bits (61), Expect = 5.0
Identities = 12/35 (34%), Positives = 22/35 (62%)
Frame = +2
Query: 107 AAPSSIKSAPSLAGEATWSFFKQLYSGDFPDILAL 211
A PSS+ S+ ++AG+ TW+ + +++ IL L
Sbjct: 32 APPSSVHSSYAVAGDLTWAILETIHAAIGHQILTL 66
>01_06_1732 -
39531577-39531726,39531809-39531925,39532175-39532354,
39532704-39532802,39533571-39533675,39534046-39534138,
39534243-39534326
Length = 275
Score = 28.3 bits (60), Expect = 6.6
Identities = 15/33 (45%), Positives = 21/33 (63%)
Frame = +2
Query: 170 KQLYSGDFPDILALLRAYRPRSINPLDEVPSKL 268
K+L +GDF L LL+ Y P +I+ L V +KL
Sbjct: 242 KRLLAGDFTSNLKLLQNYPPTNISHLLYVANKL 274
>01_06_0872 +
32609792-32610178,32611262-32611387,32611477-32611550,
32611944-32612013,32612088-32612143,32612236-32612307,
32612384-32612478,32612660-32612726,32612809-32612938,
32613135-32613350,32613461-32613591,32614044-32614218,
32614292-32614382,32614653-32614810,32615059-32615247,
32615551-32615564,32616003-32616228
Length = 758
Score = 28.3 bits (60), Expect = 6.6
Identities = 13/33 (39%), Positives = 17/33 (51%)
Frame = +2
Query: 284 NGQHIFTFDGRHLTFPGNCRYVLAHDHVDRNST 382
NGQH+ +D R F G RY H H+ R +
Sbjct: 302 NGQHV-DYDQRPDIFRGTIRYASVHAHLGRTGS 333
>11_04_0307 +
16185405-16185713,16185847-16185942,16186626-16186730,
16186938-16187090,16188395-16188478,16188566-16188694,
16188986-16189165,16189555-16189677,16189678-16189794,
16189889-16190053
Length = 486
Score = 27.9 bits (59), Expect = 8.7
Identities = 13/39 (33%), Positives = 24/39 (61%)
Frame = +2
Query: 170 KQLYSGDFPDILALLRAYRPRSINPLDEVPSKLRAVVVN 286
++L +GDF + LL+ Y P +I+ L + ++LR V +
Sbjct: 448 RRLLAGDFTANIQLLQHYPPTNIDHLLHIANRLRGSVAS 486
>05_04_0319 +
20171486-20171800,20171882-20171956,20172160-20172195,
20172302-20172413,20173082-20173152,20173287-20173417,
20173718-20173783,20174003-20174103,20174311-20174370,
20174463-20174496,20174852-20174950,20175019-20175078,
20175700-20175874,20175900-20175950,20176603-20176632
Length = 471
Score = 27.9 bits (59), Expect = 8.7
Identities = 28/113 (24%), Positives = 46/113 (40%), Gaps = 2/113 (1%)
Frame = +2
Query: 362 HVDRNSTLLIQLQNGKPKALILEDKSGAIIELKENGQAILNGASKGFPIIEKDVFAFRQP 541
HV R + + IL+D ++ L E ++NG+S+G P++ P
Sbjct: 44 HVSRELRMTAEGSKYADGEAILKDAFQRMVTLIELDH-VINGSSQGLPLLAGVNVVVHLP 102
Query: 542 SNRI--GVGSLYGLMVFCTSKLEVCYIEANGFYLGNLXAVFSETVTTSLTMTS 694
+ + GV Y L V T IEA + G L A+ + + + TS
Sbjct: 103 GDELNFGVDESYNLSVPATGSPIYAQIEAQTVF-GALHALETFSQLCNFDFTS 154
>03_02_0663 +
10256898-10258915,10259162-10259248,10259463-10259724,
10259802-10260111,10260535-10260645,10260861-10261090
Length = 1005
Score = 27.9 bits (59), Expect = 8.7
Identities = 17/62 (27%), Positives = 27/62 (43%)
Frame = -2
Query: 313 TVEREDVLTVHNNSAELRRHFV*WVDATRSVGSEKGQDVREITGVQLLEEAPRCLSSKRR 134
T R++ L S +++R F + ++G ++ VQLLE A C S R
Sbjct: 727 TGHRDEALAKAEQSIKIQRSFEAFFLKAYALGDSSLDTESSLSVVQLLEHANSCASDNLR 786
Query: 133 SG 128
G
Sbjct: 787 KG 788
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,560,881
Number of Sequences: 37544
Number of extensions: 389784
Number of successful extensions: 1094
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 1070
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1094
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1898162308
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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