Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brS-0859
(725 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_26224| Best HMM Match : VWD (HMM E-Value=0) 42 7e-04
SB_40683| Best HMM Match : VWD (HMM E-Value=2.4e-05) 42 7e-04
SB_59202| Best HMM Match : No HMM Matches (HMM E-Value=.) 32 0.41
SB_25762| Best HMM Match : VWD (HMM E-Value=2.2e-16) 31 0.95
SB_58732| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 1.3
SB_37044| Best HMM Match : rve (HMM E-Value=4.1e-07) 30 1.7
SB_40727| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.8
SB_34342| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.8
SB_14435| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 8.9
>SB_26224| Best HMM Match : VWD (HMM E-Value=0)
Length = 736
Score = 41.5 bits (93), Expect = 7e-04
Identities = 17/40 (42%), Positives = 23/40 (57%)
Frame = +2
Query: 290 QHIFTFDGRHLTFPGNCRYVLAHDHVDRNSTLLIQLQNGK 409
+H TFDGRH+ F G C Y LA D + + + +QN K
Sbjct: 222 RHYRTFDGRHIDFIGKCSYTLAQDCIPGSDQFSLHVQNDK 261
Score = 29.5 bits (63), Expect = 2.9
Identities = 10/20 (50%), Positives = 14/20 (70%)
Frame = +2
Query: 293 HIFTFDGRHLTFPGNCRYVL 352
H +FDG+ TF G C+Y+L
Sbjct: 576 HFVSFDGKAFTFGGKCQYLL 595
>SB_40683| Best HMM Match : VWD (HMM E-Value=2.4e-05)
Length = 2200
Score = 41.5 bits (93), Expect = 7e-04
Identities = 36/152 (23%), Positives = 66/152 (43%), Gaps = 11/152 (7%)
Frame = +2
Query: 224 RPRSINPLDEVPSKLRAVVVNGQHIFTFDGRHLTFPG----NCRYVLAHDHVDRNSTLLI 391
RPR+ P P A++ H+ TFD + FPG C YVLA D D T++
Sbjct: 1632 RPRNWVP----PFNSTAMIFGKPHVSTFDSLYYRFPGYNKPECTYVLARDVRDNKFTIMS 1687
Query: 392 Q-------LQNGKPKALILEDKSGAIIELKENGQAILNGASKGFPIIEKDVFAFRQPSNR 550
Q ++G K + + +++++ G IL+G + P+ K++ R+
Sbjct: 1688 QEDAMILITEDGNVK-IHSSGRVESMVKIDAEGNKILDGYNSELPVQTKNMTVTRE-GPF 1745
Query: 551 IGVGSLYGLMVFCTSKLEVCYIEANGFYLGNL 646
+ + G+ + C + C + ++ G L
Sbjct: 1746 VVLRHDIGIEILCDMEHNACTFNFDKWFHGRL 1777
>SB_59202| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1530
Score = 32.3 bits (70), Expect = 0.41
Identities = 15/45 (33%), Positives = 21/45 (46%), Gaps = 1/45 (2%)
Frame = +2
Query: 251 EVPSKLRAVVVNGQHIFTFDGRHLTFPGNCRYVLA-HDHVDRNST 382
+ P +V H TFD R + G C YVL+ H H ++T
Sbjct: 843 DTPCSGTCTMVGNSHFTTFDSRSYSMHGQCDYVLSEHCHFSNDTT 887
>SB_25762| Best HMM Match : VWD (HMM E-Value=2.2e-16)
Length = 705
Score = 31.1 bits (67), Expect = 0.95
Identities = 12/23 (52%), Positives = 15/23 (65%)
Frame = +2
Query: 293 HIFTFDGRHLTFPGNCRYVLAHD 361
H TFDGR +F G C YV++ D
Sbjct: 33 HYKTFDGRLYSFQGGCNYVMSTD 55
>SB_58732| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 365
Score = 30.7 bits (66), Expect = 1.3
Identities = 16/54 (29%), Positives = 28/54 (51%)
Frame = -2
Query: 523 HILFDDRESFGSSVQNSLSIFFQFDDSSALIFQNKSLGFSVLKLD*QRGVSIDV 362
HIL ++ FGS + S+ F S L+F + +G V + D + +S++V
Sbjct: 104 HILVNNAAYFGSKGMSRFSVAFPILFSRVLMFHGRVIGLDVEEKDWHKTMSVNV 157
>SB_37044| Best HMM Match : rve (HMM E-Value=4.1e-07)
Length = 1033
Score = 30.3 bits (65), Expect = 1.7
Identities = 14/32 (43%), Positives = 18/32 (56%)
Frame = +1
Query: 298 LHVRRSPPHLPRKLSLRIGARPRR*KLHAANP 393
L VR+ PP L RKL+ R+ P+R L P
Sbjct: 978 LRVRKDPPPLKRKLAQRVAIPPKRIALGEVTP 1009
>SB_40727| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1393
Score = 29.1 bits (62), Expect = 3.8
Identities = 23/72 (31%), Positives = 39/72 (54%), Gaps = 1/72 (1%)
Frame = +3
Query: 165 SSSSCTPVISLTSWPFSEPTDLVASTH*TKCRLSSALLL*TVNTSSRST-VATSPSQETV 341
+S+S TP I+ T + T L+A+T + L+ T + ++++T +AT+PS T
Sbjct: 691 TSTSQTPPIATTP-SLTTQTTLIATT--PSLTTQTTLIATTPSLTTQTTLIATTPSLTTQ 747
Query: 342 ATYWRTTTSIET 377
T TT S+ T
Sbjct: 748 TTLIATTPSLTT 759
Score = 27.9 bits (59), Expect = 8.9
Identities = 21/72 (29%), Positives = 39/72 (54%), Gaps = 1/72 (1%)
Frame = +3
Query: 165 SSSSCTPVISLTSWPFSEPTDLVASTH*TKCRLSSALLL*TVNTSSRST-VATSPSQETV 341
S+++ TP I+ T+ + T +A+T + L+ T + ++++T +AT+PS T
Sbjct: 677 SATTQTPPIASTTDTSTSQTPPIATT--PSLTTQTTLIATTPSLTTQTTLIATTPSLTTQ 734
Query: 342 ATYWRTTTSIET 377
T TT S+ T
Sbjct: 735 TTLIATTPSLTT 746
>SB_34342| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 665
Score = 29.1 bits (62), Expect = 3.8
Identities = 20/69 (28%), Positives = 30/69 (43%)
Frame = +2
Query: 275 VVVNGQHIFTFDGRHLTFPGNCRYVLAHDHVDRNSTLLIQLQNGKPKALILEDKSGAIIE 454
+ ++ HIF DG H FP + V AH + T I+L L+LE + E
Sbjct: 252 IAIHFSHIFAGDGFHFVFP-SLLQVYAHHQGNDMVTRAIELFASVAPILLLETRLEDATE 310
Query: 455 LKENGQAIL 481
L+ + L
Sbjct: 311 LEPDDPTAL 319
>SB_14435| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 234
Score = 27.9 bits (59), Expect = 8.9
Identities = 17/59 (28%), Positives = 23/59 (38%)
Frame = +1
Query: 238 QPTRRSAV*APRCCCERSTHLHVRRSPPHLPRKLSLRIGARPRR*KLHAANPTSKRKTQ 414
Q +RR+A P +R R P PR +GAR R + P +R Q
Sbjct: 22 QQSRRTARSPPHSTTDREDGTLAERHAPQAPRSALTDVGARLREVRRSGNQPERQRSIQ 80
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,429,233
Number of Sequences: 59808
Number of extensions: 444439
Number of successful extensions: 1366
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1266
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1360
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1937927537
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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