Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0859
         (725 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z74043-10|CAA98542.2|  653|Caenorhabditis elegans Hypothetical p...    31   1.1  
Z48582-8|CAB70201.1| 3178|Caenorhabditis elegans Hypothetical pr...    31   1.1  
Z48544-10|CAB70192.1| 3178|Caenorhabditis elegans Hypothetical p...    31   1.1  
U21310-3|AAA62522.2| 1288|Caenorhabditis elegans Hypothetical pr...    30   1.5  
Z81583-7|CAB04668.1|  268|Caenorhabditis elegans Hypothetical pr...    30   1.9  
AF077534-3|AAC26290.1|  389|Caenorhabditis elegans Hypothetical ...    30   1.9  
Z81540-1|CAB04402.1|  186|Caenorhabditis elegans Hypothetical pr...    29   3.4  
Z81052-5|CAB02876.1|  512|Caenorhabditis elegans Hypothetical pr...    29   3.4  
Z81044-5|CAE17706.2|  460|Caenorhabditis elegans Hypothetical pr...    28   5.9  
U53341-6|AAC69106.1|  790|Caenorhabditis elegans Hypothetical pr...    28   5.9  
U53341-5|AAL06020.1|  842|Caenorhabditis elegans Hypothetical pr...    28   5.9  
L23646-3|AAK67236.1| 1283|Caenorhabditis elegans Hypothetical pr...    28   5.9  
Z99273-4|CAB16479.1|  124|Caenorhabditis elegans Hypothetical pr...    28   7.8  
Z29560-5|CAA82664.1| 1385|Caenorhabditis elegans Hypothetical pr...    28   7.8  
Z29095-2|CAD18875.1| 2056|Caenorhabditis elegans Hypothetical pr...    28   7.8  

>Z74043-10|CAA98542.2|  653|Caenorhabditis elegans Hypothetical
           protein T19B10.3 protein.
          Length = 653

 Score = 30.7 bits (66), Expect = 1.1
 Identities = 20/88 (22%), Positives = 38/88 (43%)
 Frame = +2

Query: 275 VVVNGQHIFTFDGRHLTFPGNCRYVLAHDHVDRNSTLLIQLQNGKPKALILEDKSGAIIE 454
           V +NG++I T   R+     N   +      + N   ++    G+     + D+ G + +
Sbjct: 458 VYLNGKYIDTLTRRYYNLTRNSVIIEGCLENEENRLFMLVENQGRKTFETINDRKGILSD 517

Query: 455 LKENGQAILNGASKGFPIIEKDVFAFRQ 538
           +  NGQAI      G  +  ++ F FR+
Sbjct: 518 VFMNGQAIQFWTQCGIKLPLQEDFYFRK 545


>Z48582-8|CAB70201.1| 3178|Caenorhabditis elegans Hypothetical
           protein ZK945.9 protein.
          Length = 3178

 Score = 30.7 bits (66), Expect = 1.1
 Identities = 26/71 (36%), Positives = 36/71 (50%), Gaps = 1/71 (1%)
 Frame = +3

Query: 165 SSSSCTPVISL-TSWPFSEPTDLVASTH*TKCRLSSALLL*TVNTSSRSTVATSPSQETV 341
           S+S+ T  +S  TS P +  T    ST  T    +S     T   SS ST+ +SPS  T+
Sbjct: 299 STSTVTTAMSTSTSTPSTSTTIESTSTTFTSTASTSTSSTSTTQQSS-STITSSPSSTTL 357

Query: 342 ATYWRTTTSIE 374
           +T   TTT+ E
Sbjct: 358 STSIPTTTTPE 368


>Z48544-10|CAB70192.1| 3178|Caenorhabditis elegans Hypothetical
           protein ZK945.9 protein.
          Length = 3178

 Score = 30.7 bits (66), Expect = 1.1
 Identities = 26/71 (36%), Positives = 36/71 (50%), Gaps = 1/71 (1%)
 Frame = +3

Query: 165 SSSSCTPVISL-TSWPFSEPTDLVASTH*TKCRLSSALLL*TVNTSSRSTVATSPSQETV 341
           S+S+ T  +S  TS P +  T    ST  T    +S     T   SS ST+ +SPS  T+
Sbjct: 299 STSTVTTAMSTSTSTPSTSTTIESTSTTFTSTASTSTSSTSTTQQSS-STITSSPSSTTL 357

Query: 342 ATYWRTTTSIE 374
           +T   TTT+ E
Sbjct: 358 STSIPTTTTPE 368


>U21310-3|AAA62522.2| 1288|Caenorhabditis elegans Hypothetical protein
            F40H6.5 protein.
          Length = 1288

 Score = 30.3 bits (65), Expect = 1.5
 Identities = 25/70 (35%), Positives = 34/70 (48%), Gaps = 2/70 (2%)
 Frame = +3

Query: 162  ASSSSCTPVISLTSWPFSEP-TDLVASTH*TKCRLSSALLL*TVNTSSRS-TVATSPSQE 335
            AS+S  TP  +LTS   + P T  +  T  T+   S  L     +TSS + +  TSP+  
Sbjct: 920  ASTSQSTPSATLTSTTENIPSTSKIPETSTTQRPTSPILTSGATSTSSSTESTTTSPTTS 979

Query: 336  TVATYWRTTT 365
            T  T   TTT
Sbjct: 980  TTTTLPPTTT 989


>Z81583-7|CAB04668.1|  268|Caenorhabditis elegans Hypothetical
           protein T02G6.7 protein.
          Length = 268

 Score = 29.9 bits (64), Expect = 1.9
 Identities = 14/40 (35%), Positives = 23/40 (57%), Gaps = 3/40 (7%)
 Frame = +2

Query: 239 NPLDEVPSKLRAVVVNG---QHIFTFDGRHLTFPGNCRYV 349
           +PLD  P K+ + ++N    ++  TFDG    F  NCR++
Sbjct: 77  DPLDLFPMKMESPLINFLDFKYNITFDGEIWNFKYNCRFI 116


>AF077534-3|AAC26290.1|  389|Caenorhabditis elegans Hypothetical
           protein K07D4.6 protein.
          Length = 389

 Score = 29.9 bits (64), Expect = 1.9
 Identities = 23/71 (32%), Positives = 33/71 (46%), Gaps = 2/71 (2%)
 Frame = +3

Query: 171 SSCTPVISLTSWPFSEPTDLVASTH*TKCRLSSALLL*TVNT--SSRSTVATSPSQETVA 344
           SS T V   T    +EP     ST  T+   +++    T  T  +S ST++T+ +  T  
Sbjct: 250 SSLTAVPGTTEETSTEPETTTTSTTTTEPTTTTSTTTQTTTTVPTSTSTISTTSTTTTTP 309

Query: 345 TYWRTTTSIET 377
           T   TTTS  T
Sbjct: 310 TTTTTTTSTTT 320


>Z81540-1|CAB04402.1|  186|Caenorhabditis elegans Hypothetical
           protein F46B3.1 protein.
          Length = 186

 Score = 29.1 bits (62), Expect = 3.4
 Identities = 17/53 (32%), Positives = 23/53 (43%), Gaps = 3/53 (5%)
 Frame = +3

Query: 177 CTPVISLTSW---PFSEPTDLVASTH*TKCRLSSALLL*TVNTSSRSTVATSP 326
           C P I +  W   P  +  +     H TKC LS  L    V T + +T  T+P
Sbjct: 88  CPPAICVDQWDNCPLYKLINQCTRYHKTKCPLSCGLCTGNVTTPATTTSTTTP 140


>Z81052-5|CAB02876.1|  512|Caenorhabditis elegans Hypothetical
           protein D2023.6 protein.
          Length = 512

 Score = 29.1 bits (62), Expect = 3.4
 Identities = 18/74 (24%), Positives = 39/74 (52%)
 Frame = +2

Query: 356 HDHVDRNSTLLIQLQNGKPKALILEDKSGAIIELKENGQAILNGASKGFPIIEKDVFAFR 535
           H      + L+  L NGK + ++L+   G  + + ++ + + +       I++ D+   R
Sbjct: 313 HSDPHPGNVLINSLGNGKYEIVLLDH--GLYLNISDHIRKLYSDL--WLAILKPDLQEIR 368

Query: 536 QPSNRIGVGSLYGL 577
           + ++++GVG LYGL
Sbjct: 369 KVASQMGVGELYGL 382


>Z81044-5|CAE17706.2|  460|Caenorhabditis elegans Hypothetical
           protein C30H6.11 protein.
          Length = 460

 Score = 28.3 bits (60), Expect = 5.9
 Identities = 17/72 (23%), Positives = 35/72 (48%)
 Frame = +3

Query: 165 SSSSCTPVISLTSWPFSEPTDLVASTH*TKCRLSSALLL*TVNTSSRSTVATSPSQETVA 344
           +S + T   + T+   ++PT    +   T    ++     T   +++ST  T+ + +T +
Sbjct: 251 TSETTTTTPTTTTQTTTKPTTTTTTPTTTPTTTTTPTTTTTTAKTTKSTTTTTKTTKTTS 310

Query: 345 TYWRTTTSIETP 380
           T   TTT+ +TP
Sbjct: 311 TPTTTTTTPKTP 322


>U53341-6|AAC69106.1|  790|Caenorhabditis elegans Hypothetical
           protein F49E10.2a protein.
          Length = 790

 Score = 28.3 bits (60), Expect = 5.9
 Identities = 14/43 (32%), Positives = 22/43 (51%)
 Frame = +3

Query: 285 TVNTSSRSTVATSPSQETVATYWRTTTSIETPRC*SNFKTENP 413
           T  T+ + T +TS S  T  T   +TT+  TP+  +   +E P
Sbjct: 614 TTTTTPKPTTSTSTSTSTTTTTTTSTTATTTPQPTTTTTSEKP 656


>U53341-5|AAL06020.1|  842|Caenorhabditis elegans Hypothetical
           protein F49E10.2b protein.
          Length = 842

 Score = 28.3 bits (60), Expect = 5.9
 Identities = 14/43 (32%), Positives = 22/43 (51%)
 Frame = +3

Query: 285 TVNTSSRSTVATSPSQETVATYWRTTTSIETPRC*SNFKTENP 413
           T  T+ + T +TS S  T  T   +TT+  TP+  +   +E P
Sbjct: 614 TTTTTPKPTTSTSTSTSTTTTTTTSTTATTTPQPTTTTTSEKP 656


>L23646-3|AAK67236.1| 1283|Caenorhabditis elegans Hypothetical protein
            F44E2.4 protein.
          Length = 1283

 Score = 28.3 bits (60), Expect = 5.9
 Identities = 14/31 (45%), Positives = 19/31 (61%)
 Frame = +3

Query: 288  VNTSSRSTVATSPSQETVATYWRTTTSIETP 380
            V+TSS S   ++P QET  T   TT + E+P
Sbjct: 1010 VSTSSESDSESAPEQETEPTVPSTTETTESP 1040


>Z99273-4|CAB16479.1|  124|Caenorhabditis elegans Hypothetical
           protein Y45F10C.4 protein.
          Length = 124

 Score = 27.9 bits (59), Expect = 7.8
 Identities = 18/93 (19%), Positives = 40/93 (43%), Gaps = 1/93 (1%)
 Frame = +3

Query: 321 SPSQETVATYWRTTTSIETPRC*SNFKTENPRLL-FWKIRAELSSN*KKMDRLF*TELPK 497
           S S  +++  W+        +  ++ KT N +    WK+ ++ +    +  ++       
Sbjct: 19  SGSFSSISEEWKAVCECNLSKLNNHAKTGNCKTTALWKVTSDTNCTASEYLKITVFPAND 78

Query: 498 DSRSSKRMCSLSVNQATESVLAHCTVSWSSAHL 596
           D  +    C+++    TE   A C V++S+A L
Sbjct: 79  DPLNRVEQCTMTPCDQTEKTPADCNVAFSAAKL 111


>Z29560-5|CAA82664.1| 1385|Caenorhabditis elegans Hypothetical protein
            K03H1.5 protein.
          Length = 1385

 Score = 27.9 bits (59), Expect = 7.8
 Identities = 16/64 (25%), Positives = 27/64 (42%)
 Frame = +2

Query: 221  YRPRSINPLDEVPSKLRAVVVNGQHIFTFDGRHLTFPGNCRYVLAHDHVDRNSTLLIQLQ 400
            Y  R  N   +  +     +    H+ T+DG   T PG   YVL       +  L++Q++
Sbjct: 837  YWRRMTNGCQDYRAPAAGYIYGEPHVITYDGIRYTMPGKGYYVLTMSDSPYHK-LMVQVR 895

Query: 401  NGKP 412
              +P
Sbjct: 896  LEQP 899


>Z29095-2|CAD18875.1| 2056|Caenorhabditis elegans Hypothetical
           protein R10E11.1b protein.
          Length = 2056

 Score = 27.9 bits (59), Expect = 7.8
 Identities = 12/49 (24%), Positives = 21/49 (42%)
 Frame = +3

Query: 240 TH*TKCRLSSALLL*TVNTSSRSTVATSPSQETVATYWRTTTSIETPRC 386
           TH T C +       T  T+ + +VA   S   +  +W+  +  + P C
Sbjct: 454 THMTSCNVGRLCHSDTTQTTKKCSVAHCASSRQIIAHWKNCSREDCPVC 502


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,678,237
Number of Sequences: 27780
Number of extensions: 327794
Number of successful extensions: 977
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 881
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 961
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1708383636
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)