Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0859
         (725 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ026037-1|AAY87896.1|  431|Apis mellifera nicotinic acetylcholi...    24   1.7  
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             23   3.9  
DQ325077-1|ABD14091.1|  181|Apis mellifera complementary sex det...    22   5.1  
DQ325076-1|ABD14090.1|  191|Apis mellifera complementary sex det...    22   5.1  

>DQ026037-1|AAY87896.1|  431|Apis mellifera nicotinic acetylcholine
           receptor alpha9subunit protein.
          Length = 431

 Score = 23.8 bits (49), Expect = 1.7
 Identities = 14/37 (37%), Positives = 19/37 (51%)
 Frame = +3

Query: 483 TELPKDSRSSKRMCSLSVNQATESVLAHCTVSWSSAH 593
           T L  DSRS++RM + SVN     +L    + W   H
Sbjct: 272 TVLWLDSRSTERMIAASVNLICH-ILCMSDLHWQLPH 307


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 22.6 bits (46), Expect = 3.9
 Identities = 9/20 (45%), Positives = 12/20 (60%)
 Frame = +2

Query: 74   INTTPDFANFFAAPSSIKSA 133
            +N  PD  N +A P+  KSA
Sbjct: 1467 LNHYPDLHNLYAVPTDKKSA 1486


>DQ325077-1|ABD14091.1|  181|Apis mellifera complementary sex
           determiner protein.
          Length = 181

 Score = 22.2 bits (45), Expect = 5.1
 Identities = 10/24 (41%), Positives = 15/24 (62%)
 Frame = +1

Query: 436 ERSYHRIERKWTGYSERSFQRIPD 507
           E+  ++ ERK+  Y ERS +R  D
Sbjct: 46  EQKSYKNERKYRKYRERSKERSRD 69


>DQ325076-1|ABD14090.1|  191|Apis mellifera complementary sex
           determiner protein.
          Length = 191

 Score = 22.2 bits (45), Expect = 5.1
 Identities = 10/24 (41%), Positives = 15/24 (62%)
 Frame = +1

Query: 436 ERSYHRIERKWTGYSERSFQRIPD 507
           E+  ++ ERK+  Y ERS +R  D
Sbjct: 46  EQKSYKNERKYRKYRERSKERSRD 69


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 185,285
Number of Sequences: 438
Number of extensions: 3930
Number of successful extensions: 7
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 22535775
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)