Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brS-0859
(725 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At4g01210.1 68417.m00159 glycosyltransferase family protein 1 co... 31 1.0
At4g37710.1 68417.m05338 VQ motif-containing protein contains PF... 29 4.1
At5g27100.1 68418.m03235 glutamate receptor family protein (GLR2... 28 5.5
At3g13670.1 68416.m01722 protein kinase family protein contains ... 28 5.5
At4g13730.1 68417.m02132 RabGAP/TBC domain-containing protein lo... 28 7.2
At1g22530.1 68414.m02814 SEC14 cytosolic factor family protein /... 28 7.2
At5g14520.1 68418.m01702 pescadillo-related similar to pescadill... 27 9.6
At4g09450.1 68417.m01555 myb family transcription factor contain... 27 9.6
At3g13080.4 68416.m01638 ABC transporter family protein almost i... 27 9.6
At3g13080.3 68416.m01637 ABC transporter family protein almost i... 27 9.6
At3g13080.2 68416.m01636 ABC transporter family protein almost i... 27 9.6
At3g13080.1 68416.m01635 ABC transporter family protein almost i... 27 9.6
>At4g01210.1 68417.m00159 glycosyltransferase family protein 1
contains Pfam profile: PF00534 Glycosyl transferases
group 1
Length = 981
Score = 30.7 bits (66), Expect = 1.0
Identities = 31/125 (24%), Positives = 56/125 (44%), Gaps = 4/125 (3%)
Frame = +2
Query: 176 LYSGDFPDILALLRAYRPR-SINPLDEVPSKLRAVVVNGQHIFTFDGRHLTFPGNCRY-- 346
LY G + + LL+A RP S N L+ S L+ +V+ G+ + T N Y
Sbjct: 337 LYKGQWLEHALLLQALRPLFSGNYLESDNSHLKIIVLGGETASNYSVAIETISQNLTYPK 396
Query: 347 -VLAHDHVDRNSTLLIQLQNGKPKALILEDKSGAIIELKENGQAILNGASKGFPIIEKDV 523
+ H V N +++ + L++ G+ +E + + ++ S G PI+ D+
Sbjct: 397 EAVKHVRVAGNVDKILESSD-----LVIY---GSFLEEQSFPEILMKAMSLGKPIVAPDL 448
Query: 524 FAFRQ 538
F R+
Sbjct: 449 FNIRK 453
>At4g37710.1 68417.m05338 VQ motif-containing protein contains
PF05678: VQ motif
Length = 123
Score = 28.7 bits (61), Expect = 4.1
Identities = 23/63 (36%), Positives = 29/63 (46%), Gaps = 3/63 (4%)
Frame = -2
Query: 643 VTQVEAVSFNVAHLKFRCAEDHETVQ--*ANTDSVAWLTESEHILFDDRESFGS-SVQNS 473
V +VE V+F V + A +HETVQ T A S FD S+G S QN
Sbjct: 58 VYRVEPVNFKVLVQRLTGAPEHETVQAKPLKTSDDAAKQSSSSFAFDPSSSWGDFSFQNP 117
Query: 472 LSI 464
+I
Sbjct: 118 ANI 120
>At5g27100.1 68418.m03235 glutamate receptor family protein (GLR2.1)
(GLR3) plant glutamate receptor family, PMID:11379626
Length = 909
Score = 28.3 bits (60), Expect = 5.5
Identities = 13/39 (33%), Positives = 25/39 (64%)
Frame = -3
Query: 126 LIELGAAKKFAKSGVVLIMPNSFS*VLKNWTSDVTAVIN 10
L+EL A++ FAK+ + +M + +L N +DV +++N
Sbjct: 229 LVELLASRFFAKATEIGLMKQGYVWILTNTITDVLSIMN 267
>At3g13670.1 68416.m01722 protein kinase family protein contains
Pfam domains, PF00069: Protein kinase domain
Length = 703
Score = 28.3 bits (60), Expect = 5.5
Identities = 13/33 (39%), Positives = 19/33 (57%)
Frame = +2
Query: 284 NGQHIFTFDGRHLTFPGNCRYVLAHDHVDRNST 382
+GQH+ +D R F G RY AH H+ R ++
Sbjct: 302 SGQHV-EYDQRPDMFRGTVRYASAHAHLGRTAS 333
>At4g13730.1 68417.m02132 RabGAP/TBC domain-containing protein low
similarity to SP|Q08484 GTPase-activating protein GYP1
{Saccharomyces cerevisiae}; contains Pfam profile
PF00566: TBC domain
Length = 449
Score = 27.9 bits (59), Expect = 7.2
Identities = 14/34 (41%), Positives = 21/34 (61%)
Frame = +2
Query: 170 KQLYSGDFPDILALLRAYRPRSINPLDEVPSKLR 271
++L +GDF L LL+ Y P +I+ + V KLR
Sbjct: 414 RRLLAGDFTSNLKLLQNYPPTNISHMLYVADKLR 447
>At1g22530.1 68414.m02814 SEC14 cytosolic factor family protein /
phosphoglyceride transfer family protein contains Pfam
PF00650 : CRAL/TRIO domain; contains Pfam PF03765 :
CRAL/TRIO, N-terminus; similar to SEC14-like protein 2
(Alpha-tocopherol associated protein) (TAP) (bTAP)
(Fragment) (SP:P58875) {Bos taurus}
Length = 683
Score = 27.9 bits (59), Expect = 7.2
Identities = 12/48 (25%), Positives = 25/48 (52%), Gaps = 3/48 (6%)
Frame = +2
Query: 74 INTTPDFANFFAAPSSIKSAPSLAGEATWSFFKQL---YSGDFPDILA 208
++ +P+ + F S ++AP L A W F K+ + ++P+ +A
Sbjct: 465 LDFSPEAKSSFVFVSDFRNAPGLGQRALWQFIKRAVKQFEDNYPEFVA 512
>At5g14520.1 68418.m01702 pescadillo-related similar to pescadillo
[Zebrafish, Danio rerio] SWISS-PROT:P79741
Length = 590
Score = 27.5 bits (58), Expect = 9.6
Identities = 11/32 (34%), Positives = 18/32 (56%)
Frame = -2
Query: 373 SIDVVVRQYVATVSWEGEVATVEREDVLTVHN 278
S+ +V+ + VSWEGE A + +D H+
Sbjct: 352 SLQLVITAFGGMVSWEGEGAPFKEDDESITHH 383
>At4g09450.1 68417.m01555 myb family transcription factor contains
Pfam profile: PF00249 myb-like DNA-binding domain
Length = 200
Score = 27.5 bits (58), Expect = 9.6
Identities = 13/47 (27%), Positives = 23/47 (48%)
Frame = +2
Query: 449 IELKENGQAILNGASKGFPIIEKDVFAFRQPSNRIGVGSLYGLMVFC 589
++L E G++ NG G P E++ F + N+ G G + +C
Sbjct: 74 VKLTEAGESKGNGKKTGIPWSEEEQRLFLEGLNKFGKGDWKNISRYC 120
>At3g13080.4 68416.m01638 ABC transporter family protein almost
identical to MRP-like ABC transporter GI:2316016 from
[Arabidopsis thaliana]; contains Pfam profile: PF00005
ABC transporter
Length = 1120
Score = 27.5 bits (58), Expect = 9.6
Identities = 9/18 (50%), Positives = 12/18 (66%)
Frame = -1
Query: 419 EPWVFRFEVGLAAWSFYR 366
+PW+ +VGLA W YR
Sbjct: 443 DPWMVLLQVGLALWILYR 460
>At3g13080.3 68416.m01637 ABC transporter family protein almost
identical to MRP-like ABC transporter GI:2316016 from
[Arabidopsis thaliana]; contains Pfam profile: PF00005
ABC transporter
Length = 1120
Score = 27.5 bits (58), Expect = 9.6
Identities = 9/18 (50%), Positives = 12/18 (66%)
Frame = -1
Query: 419 EPWVFRFEVGLAAWSFYR 366
+PW+ +VGLA W YR
Sbjct: 443 DPWMVLLQVGLALWILYR 460
>At3g13080.2 68416.m01636 ABC transporter family protein almost
identical to MRP-like ABC transporter GI:2316016 from
[Arabidopsis thaliana]; contains Pfam profile: PF00005
ABC transporter
Length = 1489
Score = 27.5 bits (58), Expect = 9.6
Identities = 9/18 (50%), Positives = 12/18 (66%)
Frame = -1
Query: 419 EPWVFRFEVGLAAWSFYR 366
+PW+ +VGLA W YR
Sbjct: 443 DPWMVLLQVGLALWILYR 460
>At3g13080.1 68416.m01635 ABC transporter family protein almost
identical to MRP-like ABC transporter GI:2316016 from
[Arabidopsis thaliana]; contains Pfam profile: PF00005
ABC transporter
Length = 1514
Score = 27.5 bits (58), Expect = 9.6
Identities = 9/18 (50%), Positives = 12/18 (66%)
Frame = -1
Query: 419 EPWVFRFEVGLAAWSFYR 366
+PW+ +VGLA W YR
Sbjct: 443 DPWMVLLQVGLALWILYR 460
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,885,706
Number of Sequences: 28952
Number of extensions: 311412
Number of successful extensions: 918
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 896
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 918
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1584903024
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -