Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0856
         (708 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

X91618-1|CAA62821.1|  524|Tribolium castaneum hunchback protein.       28   0.065
AM295015-1|CAL25730.1|  549|Tribolium castaneum ecdysone recepto...    25   0.60 
EF222295-1|ABN79655.1|  146|Tribolium castaneum arginine vasopre...    24   1.4  
DQ414246-1|ABD63008.1|  126|Tribolium castaneum odd-skipped prot...    21   9.8  
AY887136-1|AAW78361.1|  580|Tribolium castaneum vasa RNA helicas...    21   9.8  
AY695257-1|AAW21974.1|  224|Tribolium castaneum intermediate neu...    21   9.8  
AF017415-1|AAB70262.1|  343|Tribolium castaneum abdominal-AII pr...    21   9.8  
AF017414-1|AAB70260.1|  209|Tribolium castaneum abdominal-AII pr...    21   9.8  

>X91618-1|CAA62821.1|  524|Tribolium castaneum hunchback protein.
          Length = 524

 Score = 28.3 bits (60), Expect = 0.065
 Identities = 13/36 (36%), Positives = 22/36 (61%)
 Frame = +1

Query: 55  RDLDKTITPCASKKNEKKEEETQDAMPDSTTSTEKN 162
           +D++ T+TPCAS    +K ++ QD +     S EK+
Sbjct: 124 KDMETTLTPCASP--NRKPDDNQDHLRRLEMSLEKS 157



 Score = 24.2 bits (50), Expect = 1.1
 Identities = 12/26 (46%), Positives = 15/26 (57%)
 Frame = +1

Query: 241 ELSTSNDNDLCEVGASVARCLVKFGD 318
           E S SN+N+  E G S   C + FGD
Sbjct: 457 EESDSNNNNNKEEGNSCQYCNIAFGD 482


>AM295015-1|CAL25730.1|  549|Tribolium castaneum ecdysone receptor
           (isoform A) protein.
          Length = 549

 Score = 25.0 bits (52), Expect = 0.60
 Identities = 11/23 (47%), Positives = 17/23 (73%)
 Frame = +1

Query: 82  CASKKNEKKEEETQDAMPDSTTS 150
           CA K+ EKK ++ +D  P+STT+
Sbjct: 264 CAVKRKEKKAQKEKD-KPNSTTN 285


>EF222295-1|ABN79655.1|  146|Tribolium castaneum arginine
           vasopressin-like peptide protein.
          Length = 146

 Score = 23.8 bits (49), Expect = 1.4
 Identities = 8/22 (36%), Positives = 11/22 (50%)
 Frame = +1

Query: 442 NAIIACDMCGRGYHAKCHSPPV 507
           NA+  C  CG G   +C  P +
Sbjct: 40  NAVKPCVSCGPGQSGQCFGPSI 61


>DQ414246-1|ABD63008.1|  126|Tribolium castaneum odd-skipped
           protein.
          Length = 126

 Score = 21.0 bits (42), Expect = 9.8
 Identities = 5/14 (35%), Positives = 10/14 (71%)
 Frame = +1

Query: 454 ACDMCGRGYHAKCH 495
           +CD+CG+ +  + H
Sbjct: 109 SCDICGKAFRRQDH 122


>AY887136-1|AAW78361.1|  580|Tribolium castaneum vasa RNA helicase
           protein.
          Length = 580

 Score = 21.0 bits (42), Expect = 9.8
 Identities = 10/22 (45%), Positives = 10/22 (45%)
 Frame = -1

Query: 486 GVVASATHVARDDSVGGRSSGR 421
           GV         DDS GGR  GR
Sbjct: 78  GVAVDFLGENNDDSGGGRGGGR 99


>AY695257-1|AAW21974.1|  224|Tribolium castaneum intermediate
           neuroblasts defectiveprotein protein.
          Length = 224

 Score = 21.0 bits (42), Expect = 9.8
 Identities = 7/11 (63%), Positives = 8/11 (72%)
 Frame = -1

Query: 654 SSCCCLRWLSS 622
           + CCCLR  SS
Sbjct: 188 NKCCCLRTCSS 198


>AF017415-1|AAB70262.1|  343|Tribolium castaneum abdominal-AII
           protein.
          Length = 343

 Score = 21.0 bits (42), Expect = 9.8
 Identities = 10/31 (32%), Positives = 13/31 (41%)
 Frame = -1

Query: 477 ASATHVARDDSVGGRSSGRPLASLAHHAHDA 385
           +S  H +   S    +   P  S AHH H A
Sbjct: 43  SSPQHSSSSASTSPAARMYPYVSAAHHHHQA 73


>AF017414-1|AAB70260.1|  209|Tribolium castaneum abdominal-AII
           protein.
          Length = 209

 Score = 21.0 bits (42), Expect = 9.8
 Identities = 10/31 (32%), Positives = 13/31 (41%)
 Frame = -1

Query: 477 ASATHVARDDSVGGRSSGRPLASLAHHAHDA 385
           +S  H +   S    +   P  S AHH H A
Sbjct: 43  SSPQHSSSSASTSPAARMYPYVSAAHHHHQA 73


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 158,701
Number of Sequences: 336
Number of extensions: 3615
Number of successful extensions: 10
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 18738900
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)