Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brS-0856
(708 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC4G3.07c |phf1|swp1, saf50|PHD finger containing protein Phf1... 49 8e-07
SPBC17D11.04c |||histone acetyltransferase complex subunit Nto1 ... 41 2e-04
SPAC30D11.08c |phf2|swp2, saf60|PHD finger containing protein Ph... 38 0.001
SPBP19A11.06 |lid2|SPBP4H10.01|Lid2 complex subunit Lid2 |Schizo... 35 0.013
SPAC2F7.07c |||histone deacetylase complex subunit Rco1 |Schizos... 31 0.16
SPAC343.11c |msc1||multi-copy suppressor of Chk1 |Schizosaccharo... 29 0.49
SPBC29A10.15 |orc1|orp1, cdc30|origin recognition complex subuni... 29 0.86
SPAC16C9.05 |||PHD finger containing protein|Schizosaccharomyces... 28 1.1
SPCC126.07c |||human CTD-binding SR-like protein rA9 homolog|Sch... 28 1.1
SPAC30.03c |tsn1|tsn, mug90|translin|Schizosaccharomyces pombe|c... 28 1.5
SPAC1786.02 |||phospholipase |Schizosaccharomyces pombe|chr 1|||... 28 1.5
SPBP35G2.10 |mit1||SHREC complex subunit Mit1|Schizosaccharomyce... 27 2.0
SPBC1289.02c |uap2||U2 snRNP-associated protein Uap2|Schizosacch... 27 2.6
SPAC6B12.05c |||chromatin remodeling complex subunit |Schizosacc... 26 4.6
SPBC21D10.08c |||sequence orphan|Schizosaccharomyces pombe|chr 2... 26 4.6
SPCC1020.02 |spc7||kinetochore protein Spc7|Schizosaccharomyces ... 26 4.6
SPAC3H1.12c |snt2||Lid2 complex subunit Snt2 |Schizosaccharomyce... 26 6.1
SPBC1289.10c |||transcription factor |Schizosaccharomyces pombe|... 26 6.1
SPAC27D7.02c |||GRIP domain protein|Schizosaccharomyces pombe|ch... 26 6.1
SPAC29B12.02c |set2||histone lysine methyltransferase Set2 |Schi... 25 8.0
SPBC119.05c |||Wiskott-Aldrich syndrome homolog binding protein ... 25 8.0
SPAC4D7.10c |||SAGA complex subunit Spt20 |Schizosaccharomyces p... 25 8.0
>SPCC4G3.07c |phf1|swp1, saf50|PHD finger containing protein
Phf1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 461
Score = 48.8 bits (111), Expect = 8e-07
Identities = 29/90 (32%), Positives = 41/90 (45%), Gaps = 8/90 (8%)
Frame = +1
Query: 391 MCVVCKRREGPATGPATNAIIACDMCGRGYHAKCHSPPV-DAWIN--GASWHCKRCVDQR 561
+C VC+R P + N I+ CD C YH CH PP+ DA + A W C +C +R
Sbjct: 192 LCSVCQRGHSPLS----NRIVFCDGCNSPYHQLCHHPPIDDATVQDVDAEWFCMKCQYRR 247
Query: 562 YRV-----AAAENRALKRSDLFRFKGGQPT 636
+ A++ L SD + PT
Sbjct: 248 AKQPLETGMTAQDLGLSESDKKMYLSSLPT 277
>SPBC17D11.04c |||histone acetyltransferase complex subunit Nto1
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 767
Score = 40.7 bits (91), Expect = 2e-04
Identities = 23/75 (30%), Positives = 35/75 (46%)
Frame = +1
Query: 328 SWAPVSSLKLLSVPPADDGRIMCVVCKRREGPATGPATNAIIACDMCGRGYHAKCHSPPV 507
+W P ++ + V DGR CV+C E + NAI+ CD C H C+ P
Sbjct: 179 AWMP--KIEPVRVEDELDGR--CVICNEAECENS----NAIVFCDNCNTSVHQNCYGIP- 229
Query: 508 DAWINGASWHCKRCV 552
++ W CK+C+
Sbjct: 230 --FVPEGQWFCKKCL 242
>SPAC30D11.08c |phf2|swp2, saf60|PHD finger containing protein
Phf2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 538
Score = 38.3 bits (85), Expect = 0.001
Identities = 18/59 (30%), Positives = 28/59 (47%), Gaps = 3/59 (5%)
Frame = +1
Query: 394 CVVCKRREGPATGPATNAIIACDMCGRGYHAKCHSPPV-DAWIN--GASWHCKRCVDQR 561
C VC+R + P N I+ CD C +H CH P + D ++ W C C+ ++
Sbjct: 235 CSVCQRLQSPPK----NRIVFCDGCNTPFHQLCHEPYISDELLDSPNGEWFCDDCIRRK 289
>SPBP19A11.06 |lid2|SPBP4H10.01|Lid2 complex subunit Lid2
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1513
Score = 34.7 bits (76), Expect = 0.013
Identities = 13/34 (38%), Positives = 17/34 (50%)
Frame = +1
Query: 448 IIACDMCGRGYHAKCHSPPVDAWINGASWHCKRC 549
I+ CD C YH C PP+ + I W+C C
Sbjct: 283 ILLCDGCEAAYHTSCLDPPLTS-IPKEDWYCDAC 315
Score = 31.1 bits (67), Expect = 0.16
Identities = 18/59 (30%), Positives = 24/59 (40%)
Frame = +1
Query: 433 PATNAIIACDMCGRGYHAKCHSPPVDAWINGASWHCKRCVDQRYRVAAAENRALKRSDL 609
P + +I C++C YHAKC + C C D R + NR K DL
Sbjct: 1104 PESGVMIECEICHEWYHAKCLKMSKKKLRQDEKFTCPIC-DYRVEIPRLSNRP-KLEDL 1160
>SPAC2F7.07c |||histone deacetylase complex subunit Rco1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 607
Score = 31.1 bits (67), Expect = 0.16
Identities = 16/48 (33%), Positives = 23/48 (47%), Gaps = 4/48 (8%)
Frame = +1
Query: 439 TNAIIACDMCGRGYHAKCHSPPVDAW-INGASWHCKRCVDQ---RYRV 570
+ +I+ACD C +H C +PP+ N W C D RYR+
Sbjct: 419 SQSILACDYCNSYWHPDCLNPPLATLPSNLRKWKCPNHSDHVTPRYRL 466
>SPAC343.11c |msc1||multi-copy suppressor of Chk1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1588
Score = 29.5 bits (63), Expect = 0.49
Identities = 9/43 (20%), Positives = 19/43 (44%)
Frame = +1
Query: 442 NAIIACDMCGRGYHAKCHSPPVDAWINGASWHCKRCVDQRYRV 570
++++ C +C YH C P + + W C C+ ++
Sbjct: 307 SSLVTCCICQSNYHYACVEAPFAPFSDIHYWTCNSCIPSSLKI 349
Score = 28.3 bits (60), Expect = 1.1
Identities = 9/20 (45%), Positives = 12/20 (60%)
Frame = +1
Query: 433 PATNAIIACDMCGRGYHAKC 492
P +I C++C YHAKC
Sbjct: 1179 PEAGMMIECELCHEWYHAKC 1198
>SPBC29A10.15 |orc1|orp1, cdc30|origin recognition complex subunit
Orc1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 707
Score = 28.7 bits (61), Expect = 0.86
Identities = 16/46 (34%), Positives = 22/46 (47%)
Frame = +1
Query: 109 EEETQDAMPDSTTSTEKNNANPFHCGDDVLVANKDGRYYLGTIIEL 246
EE Q S + K N + GDD+ V + D +YLG I +L
Sbjct: 42 EEPFQKEAGRSYYRSLKKNDVIYRVGDDITVHDGDSSFYLGVICKL 87
>SPAC16C9.05 |||PHD finger containing protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 404
Score = 28.3 bits (60), Expect = 1.1
Identities = 12/34 (35%), Positives = 15/34 (44%), Gaps = 1/34 (2%)
Frame = +1
Query: 451 IACDMCGRGYHAKCHSPPVDAW-INGASWHCKRC 549
I C+ C +H C PP+ I SW C C
Sbjct: 130 ICCEGCPCSFHLSCLEPPLTPENIPEGSWFCVTC 163
>SPCC126.07c |||human CTD-binding SR-like protein rA9
homolog|Schizosaccharomyces pombe|chr 3|||Manual
Length = 571
Score = 28.3 bits (60), Expect = 1.1
Identities = 24/87 (27%), Positives = 37/87 (42%)
Frame = +1
Query: 394 CVVCKRREGPATGPATNAIIACDMCGRGYHAKCHSPPVDAWINGASWHCKRCVDQRYRVA 573
CV+C R + ++ CD C YH C + +DA + ++C CV Y+
Sbjct: 125 CVICGRSDH------AEVLLLCDGCDDAYHTYCLN--MDA-VPIEEFYCPNCVLLNYQ-- 173
Query: 574 AAENRALKRSDLFRFKGGQPTKATAGA 654
EN L S + + GQ + GA
Sbjct: 174 --ENETLS-SRISLSRRGQTRRRRVGA 197
>SPAC30.03c |tsn1|tsn, mug90|translin|Schizosaccharomyces pombe|chr
1|||Manual
Length = 236
Score = 27.9 bits (59), Expect = 1.5
Identities = 11/37 (29%), Positives = 22/37 (59%)
Frame = +1
Query: 7 IKAEVSKQLSLIDELLRDLDKTITPCASKKNEKKEEE 117
I+ +++ ++ L+DE LR L + C +NE +E+
Sbjct: 19 IREKLTAEVDLLDEKLRVLQLLLANCEQSRNENLQEK 55
>SPAC1786.02 |||phospholipase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 644
Score = 27.9 bits (59), Expect = 1.5
Identities = 13/35 (37%), Positives = 21/35 (60%), Gaps = 1/35 (2%)
Frame = +1
Query: 493 HSPPVDAWINGASWHCK-RCVDQRYRVAAAENRAL 594
++PP+ ++ W K VD RYR+A +E +AL
Sbjct: 512 NTPPLVVYMPNTPWTMKSNLVDHRYRIANSEIQAL 546
>SPBP35G2.10 |mit1||SHREC complex subunit Mit1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1418
Score = 27.5 bits (58), Expect = 2.0
Identities = 13/38 (34%), Positives = 17/38 (44%)
Frame = +1
Query: 391 MCVVCKRREGPATGPATNAIIACDMCGRGYHAKCHSPP 504
+CV C RE ++G + CD C YH C P
Sbjct: 214 VCVKCHGREHRSSG---KNFVYCDHCSNVYHYDCSPLP 248
>SPBC1289.02c |uap2||U2 snRNP-associated protein
Uap2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 367
Score = 27.1 bits (57), Expect = 2.6
Identities = 23/76 (30%), Positives = 29/76 (38%), Gaps = 1/76 (1%)
Frame = +1
Query: 25 KQLSLIDELLRDLDKTITPCASKKNEKKEEETQDAMPDSTTSTE-KNNANPFHCGDDVLV 201
++L ELL DL IT A K D PD + NN C V
Sbjct: 260 EELDKTPELLIDLKDDITEEAEKCGRVTNVVLYDKEPDGVVTVRFSNNEEAEAC-----V 314
Query: 202 ANKDGRYYLGTIIELS 249
GRY+ G ++E S
Sbjct: 315 RLMQGRYFDGRVVEAS 330
>SPAC6B12.05c |||chromatin remodeling complex subunit
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 295
Score = 26.2 bits (55), Expect = 4.6
Identities = 9/22 (40%), Positives = 17/22 (77%)
Frame = +1
Query: 100 EKKEEETQDAMPDSTTSTEKNN 165
E++EEE +DA P+ +++KN+
Sbjct: 83 EEEEEEEEDATPEPVVTSKKNS 104
>SPBC21D10.08c |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 277
Score = 26.2 bits (55), Expect = 4.6
Identities = 14/51 (27%), Positives = 24/51 (47%)
Frame = +1
Query: 16 EVSKQLSLIDELLRDLDKTITPCASKKNEKKEEETQDAMPDSTTSTEKNNA 168
++ KQL + + +L+KT S E + +D D TTS+ K +
Sbjct: 211 QIQKQLECYNVRMMELNKTDENNESAICESQASSKEDERSDKTTSSSKKKS 261
>SPCC1020.02 |spc7||kinetochore protein Spc7|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1364
Score = 26.2 bits (55), Expect = 4.6
Identities = 24/81 (29%), Positives = 36/81 (44%), Gaps = 3/81 (3%)
Frame = +1
Query: 130 MPDSTTSTEKNNANPFHCGDDVLVANKDGRYYLGTIIELSTS---NDNDLCEVGASVARC 300
+P +TTS+ K P + + + D Y T +E S N N+L +VG+S A
Sbjct: 758 VPTNTTSSVKLPQQPSNEDEKERITTAD--YADSTSLERLESQEPNRNELVQVGSSNAGN 815
Query: 301 LVKFGDGTHSWAPVSSLKLLS 363
G H +PV K +S
Sbjct: 816 TTSVGMNEHEKSPVKLSKGVS 836
>SPAC3H1.12c |snt2||Lid2 complex subunit Snt2 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1131
Score = 25.8 bits (54), Expect = 6.1
Identities = 11/34 (32%), Positives = 15/34 (44%), Gaps = 1/34 (2%)
Frame = +1
Query: 451 IACDMCGRGYHAKCHSPP-VDAWINGASWHCKRC 549
+ C C + YH C PP + +G W C C
Sbjct: 275 VQCADCKKYYHMDCVVPPLLKKPPHGFGWTCATC 308
>SPBC1289.10c |||transcription factor |Schizosaccharomyces pombe|chr
2|||Manual
Length = 743
Score = 25.8 bits (54), Expect = 6.1
Identities = 17/70 (24%), Positives = 32/70 (45%)
Frame = +1
Query: 55 RDLDKTITPCASKKNEKKEEETQDAMPDSTTSTEKNNANPFHCGDDVLVANKDGRYYLGT 234
R L +TIT + K + ++ D ++TTS K + + +++ N+ L
Sbjct: 488 RPLSQTITESSVAKTKSTTPKSTDTPTEATTSPVKVSTKNSNTTENLNGINESNMPMLQN 547
Query: 235 IIELSTSNDN 264
+ L TS D+
Sbjct: 548 GLPLRTSGDH 557
>SPAC27D7.02c |||GRIP domain protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 750
Score = 25.8 bits (54), Expect = 6.1
Identities = 13/53 (24%), Positives = 29/53 (54%)
Frame = +1
Query: 7 IKAEVSKQLSLIDELLRDLDKTITPCASKKNEKKEEETQDAMPDSTTSTEKNN 165
+ +E+S Q SLI + +L+K+I C+ + + E+ ++ S+ K++
Sbjct: 135 LNSEISNQNSLILQKKDELEKSIQRCSELEEKINSLESAQSIEQEVISSLKDD 187
>SPAC29B12.02c |set2||histone lysine methyltransferase Set2
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 798
Score = 25.4 bits (53), Expect = 8.0
Identities = 15/46 (32%), Positives = 21/46 (45%)
Frame = +1
Query: 85 ASKKNEKKEEETQDAMPDSTTSTEKNNANPFHCGDDVLVANKDGRY 222
A K +EKK + +QDA D ++ + F ANK RY
Sbjct: 669 AKKLHEKKTKSSQDATIDHHLTSHSPESIAFKAVLAKFFANKTARY 714
>SPBC119.05c |||Wiskott-Aldrich syndrome homolog binding protein
Lsb1 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 296
Score = 25.4 bits (53), Expect = 8.0
Identities = 17/48 (35%), Positives = 23/48 (47%)
Frame = +2
Query: 410 DARGLPLDRPPTLSSRATCVAEATTPNVTRPPSMPGSMVHHGIVKGVL 553
+ R LP P S A+ V ++T + PPS PG H V+ VL
Sbjct: 100 EPRKLPGVPAPQKQSEASSV-NSSTEKLPPPPSYPGPNTAHKNVERVL 146
>SPAC4D7.10c |||SAGA complex subunit Spt20 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 473
Score = 25.4 bits (53), Expect = 8.0
Identities = 16/65 (24%), Positives = 27/65 (41%), Gaps = 1/65 (1%)
Frame = +1
Query: 112 EETQDAMPDSTTSTEKNNANPFHCGDDVLVANKDGRYYLGTIIELSTSN-DNDLCEVGAS 288
++T P ST ++NN NP + + N + T++ + DLC + S
Sbjct: 138 DQTVQPQPGSTNQQQQNNTNPINNQPEDTKPNTNSPPVYHTVLRPTPETLWQDLCLLSES 197
Query: 289 VARCL 303
A L
Sbjct: 198 FANSL 202
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,654,320
Number of Sequences: 5004
Number of extensions: 52071
Number of successful extensions: 193
Number of sequences better than 10.0: 22
Number of HSP's better than 10.0 without gapping: 179
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 193
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 329179816
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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