Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brS-0856
(708 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_9457| Best HMM Match : PHD (HMM E-Value=3.3e-08) 47 2e-05
SB_53804| Best HMM Match : No HMM Matches (HMM E-Value=.) 45 7e-05
SB_51340| Best HMM Match : No HMM Matches (HMM E-Value=.) 42 4e-04
SB_11347| Best HMM Match : No HMM Matches (HMM E-Value=.) 40 0.001
SB_32425| Best HMM Match : No HMM Matches (HMM E-Value=.) 40 0.002
SB_49136| Best HMM Match : No HMM Matches (HMM E-Value=.) 38 0.006
SB_21010| Best HMM Match : PHD (HMM E-Value=7e-10) 38 0.006
SB_37693| Best HMM Match : PHD (HMM E-Value=8.7e-35) 38 0.011
SB_2026| Best HMM Match : No HMM Matches (HMM E-Value=.) 36 0.032
SB_36593| Best HMM Match : PHD (HMM E-Value=3.4e-18) 36 0.032
SB_6618| Best HMM Match : No HMM Matches (HMM E-Value=.) 35 0.074
SB_5031| Best HMM Match : No HMM Matches (HMM E-Value=.) 35 0.074
SB_6589| Best HMM Match : zf-C2H2 (HMM E-Value=1.2e-36) 33 0.23
SB_3579| Best HMM Match : No HMM Matches (HMM E-Value=.) 33 0.23
SB_57821| Best HMM Match : No HMM Matches (HMM E-Value=.) 33 0.30
SB_49644| Best HMM Match : No HMM Matches (HMM E-Value=.) 32 0.40
SB_19925| Best HMM Match : TUDOR (HMM E-Value=2) 32 0.40
SB_5207| Best HMM Match : TUDOR (HMM E-Value=3.1) 32 0.40
SB_50761| Best HMM Match : RCSD (HMM E-Value=4.4) 32 0.52
SB_6176| Best HMM Match : Bromo_TP (HMM E-Value=1.5e-23) 32 0.52
SB_17346| Best HMM Match : PHD (HMM E-Value=2.1e-09) 32 0.52
SB_36259| Best HMM Match : PHD (HMM E-Value=5.3e-05) 31 0.69
SB_22901| Best HMM Match : PHD (HMM E-Value=5.3e-05) 31 0.69
SB_21083| Best HMM Match : PHD (HMM E-Value=5.3e-05) 31 0.69
SB_39447| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.69
SB_24847| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.69
SB_10962| Best HMM Match : PHD (HMM E-Value=5.3e-05) 31 0.69
SB_23757| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.92
SB_43973| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.92
SB_24946| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 1.2
SB_14389| Best HMM Match : PHD (HMM E-Value=0.0005) 31 1.2
SB_10929| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 1.2
SB_39590| Best HMM Match : PHD (HMM E-Value=2.2e-18) 30 1.6
SB_38403| Best HMM Match : PP2C (HMM E-Value=8.5e-35) 30 1.6
SB_7292| Best HMM Match : RVT_1 (HMM E-Value=0) 30 1.6
SB_58672| Best HMM Match : PHD (HMM E-Value=3e-18) 30 1.6
SB_33045| Best HMM Match : RVT_1 (HMM E-Value=3.4e-18) 30 1.6
SB_9857| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.6
SB_5465| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 2.1
SB_46602| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 2.1
SB_9001| Best HMM Match : PHD (HMM E-Value=0.00096) 30 2.1
SB_6668| Best HMM Match : PHD (HMM E-Value=0.00096) 30 2.1
SB_14243| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.8
SB_44702| Best HMM Match : Pox_A_type_inc (HMM E-Value=0.03) 29 3.7
SB_17974| Best HMM Match : PAN (HMM E-Value=0.004) 29 3.7
SB_33862| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.7
SB_17864| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.7
SB_46889| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.9
SB_17329| Best HMM Match : S-antigen (HMM E-Value=0.31) 29 4.9
SB_14079| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.9
SB_59382| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.9
SB_55139| Best HMM Match : PAN (HMM E-Value=0.055) 29 4.9
SB_40923| Best HMM Match : Pox_A_type_inc (HMM E-Value=0.29) 29 4.9
SB_20264| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.9
SB_18309| Best HMM Match : Exo_endo_phos (HMM E-Value=2.3e-09) 28 6.5
SB_14778| Best HMM Match : MH1 (HMM E-Value=2.8026e-45) 28 6.5
SB_3140| Best HMM Match : C1_3 (HMM E-Value=7) 28 6.5
SB_20744| Best HMM Match : CH (HMM E-Value=0.92) 28 6.5
SB_2877| Best HMM Match : Hom_end (HMM E-Value=1.1) 28 8.5
SB_58276| Best HMM Match : MIB_HERC2 (HMM E-Value=8.3e-33) 28 8.5
SB_32247| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 8.5
>SB_9457| Best HMM Match : PHD (HMM E-Value=3.3e-08)
Length = 344
Score = 46.8 bits (106), Expect = 2e-05
Identities = 28/78 (35%), Positives = 36/78 (46%), Gaps = 3/78 (3%)
Frame = +1
Query: 373 ADDGRIMCVVCKRREGPATGPATNAIIACDMCGRGYHAKCHSPPV---DAWINGASWHCK 543
A D + C VC E TG N ++ C C YH KCH P V DA W+C
Sbjct: 159 AIDLGVSCSVCDHSENKMTG---NKLVECHECHSHYHQKCHEPRVSDEDANDLRLVWYCT 215
Query: 544 RCVDQRYRVAAAENRALK 597
C+ ++ R A + ALK
Sbjct: 216 LCI-KKMREATSSTTALK 232
>SB_53804| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 522
Score = 44.8 bits (101), Expect = 7e-05
Identities = 21/57 (36%), Positives = 25/57 (43%)
Frame = +1
Query: 379 DGRIMCVVCKRREGPATGPATNAIIACDMCGRGYHAKCHSPPVDAWINGASWHCKRC 549
D I C C + T N ++ CD C RGYH C P + GA WHC C
Sbjct: 96 DEMIKCAECLKPSMYNTIHTKNELLLCDNCDRGYHMSCLDPKLTKAPKGA-WHCVLC 151
>SB_51340| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 4529
Score = 42.3 bits (95), Expect = 4e-04
Identities = 18/53 (33%), Positives = 24/53 (45%)
Frame = +1
Query: 394 CVVCKRREGPATGPATNAIIACDMCGRGYHAKCHSPPVDAWINGASWHCKRCV 552
C+ C EG G ++ CD C YH C PP++ + W CK CV
Sbjct: 797 CLDCTLCEGCGKGSDEARLLLCDSCDISYHTYCLDPPLEK-VPPGGWKCKWCV 848
Score = 31.5 bits (68), Expect = 0.69
Identities = 16/53 (30%), Positives = 21/53 (39%)
Frame = +1
Query: 391 MCVVCKRREGPATGPATNAIIACDMCGRGYHAKCHSPPVDAWINGASWHCKRC 549
MC+ C GP +I C CG+ +H C V+ I W C C
Sbjct: 752 MCLCCGSF---GKGPE-GQLIVCSQCGQCFHPYCVGVKVNKMILSKGWRCLDC 800
>SB_11347| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1234
Score = 40.3 bits (90), Expect = 0.001
Identities = 15/34 (44%), Positives = 20/34 (58%)
Frame = +1
Query: 448 IIACDMCGRGYHAKCHSPPVDAWINGASWHCKRC 549
+I CD C R YH +CH PP+ ++ SW C C
Sbjct: 999 LICCDGCPRVYHRECHHPPL-RYVPRGSWVCSGC 1031
Score = 37.1 bits (82), Expect = 0.014
Identities = 21/68 (30%), Positives = 30/68 (44%), Gaps = 2/68 (2%)
Frame = +1
Query: 388 IMCVVCKRREGPATGPATNAIIACDMCGRGYHAKCHSPPVDAWINGASWHCKRC--VDQR 561
+ C VC+R+ + ++ CD C GYH C P +D I W C C V +R
Sbjct: 897 VKCKVCRRKSR-----SDETLLLCDECNMGYHLFCLRPSLDR-IPLGEWKCPACKPVTRR 950
Query: 562 YRVAAAEN 585
R + N
Sbjct: 951 ERTNRSYN 958
>SB_32425| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 770
Score = 39.9 bits (89), Expect = 0.002
Identities = 20/64 (31%), Positives = 30/64 (46%)
Frame = +1
Query: 379 DGRIMCVVCKRREGPATGPATNAIIACDMCGRGYHAKCHSPPVDAWINGASWHCKRCVDQ 558
D +C +C +G +N I+ CDMC H +C+ P +I W C+RC+
Sbjct: 255 DEDAVCCICN--DGECQN--SNVILFCDMCNLAVHQECYGVP---YIPEGQWLCRRCLQS 307
Query: 559 RYRV 570
RV
Sbjct: 308 PSRV 311
>SB_49136| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1459
Score = 38.3 bits (85), Expect = 0.006
Identities = 18/57 (31%), Positives = 28/57 (49%)
Frame = +1
Query: 430 GPATNAIIACDMCGRGYHAKCHSPPVDAWINGASWHCKRCVDQRYRVAAAENRALKR 600
GPA + CD C R +H KC PP+ + SW C +C +R + + + K+
Sbjct: 1201 GPA-GKMAKCDNCPRNFHLKCLEPPL-VKMPRVSWTCPKCKKRRAKNSTPRRKREKK 1255
Score = 30.3 bits (65), Expect = 1.6
Identities = 12/36 (33%), Positives = 18/36 (50%)
Frame = +1
Query: 385 RIMCVVCKRREGPATGPATNAIIACDMCGRGYHAKC 492
++ C +C+ TG ++ CD C RGYH C
Sbjct: 1158 KVFCQMCR------TGDNEELLLLCDGCDRGYHTYC 1187
>SB_21010| Best HMM Match : PHD (HMM E-Value=7e-10)
Length = 389
Score = 38.3 bits (85), Expect = 0.006
Identities = 19/51 (37%), Positives = 25/51 (49%)
Frame = +1
Query: 397 VVCKRREGPATGPATNAIIACDMCGRGYHAKCHSPPVDAWINGASWHCKRC 549
V+ R P P + ++ CD C RGYH C +PP+D G W C C
Sbjct: 319 VLMPRTPKPCLIPQ-DQLLFCDDCDRGYHMYCLNPPMDKPPEG-HWMCSLC 367
>SB_37693| Best HMM Match : PHD (HMM E-Value=8.7e-35)
Length = 2049
Score = 37.5 bits (83), Expect = 0.011
Identities = 19/52 (36%), Positives = 26/52 (50%)
Frame = +1
Query: 394 CVVCKRREGPATGPATNAIIACDMCGRGYHAKCHSPPVDAWINGASWHCKRC 549
C +C RR+G A ++ CD C RG+H C PP+ I +W C C
Sbjct: 1627 CKLC-RRKGDA-----EKMLLCDACDRGHHMYCLKPPI-KHIPEGNWFCPDC 1671
Score = 34.7 bits (76), Expect = 0.074
Identities = 21/69 (30%), Positives = 32/69 (46%), Gaps = 3/69 (4%)
Frame = +1
Query: 448 IIACDMCGRGYHAKCHSPPVDAWINGASWHCKRC--VDQRYRVAAAENRALKRSDLFRFK 621
++ CD+C YH C PP+ G +W C+ C D+ A ++ + L + K
Sbjct: 1739 LLCCDICPLAYHVHCAYPPLRRVPRG-NWACQVCTGADEDRSSKARVKKSTIKEALKKAK 1797
Query: 622 GGQ-PTKAT 645
G Q P AT
Sbjct: 1798 GKQKPGSAT 1806
>SB_2026| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1789
Score = 35.9 bits (79), Expect = 0.032
Identities = 14/34 (41%), Positives = 17/34 (50%)
Frame = +1
Query: 448 IIACDMCGRGYHAKCHSPPVDAWINGASWHCKRC 549
++ CD C YH KC PP+ G W C RC
Sbjct: 461 LLCCDKCPMAYHLKCLIPPMMRVPTG-EWKCPRC 493
>SB_36593| Best HMM Match : PHD (HMM E-Value=3.4e-18)
Length = 134
Score = 35.9 bits (79), Expect = 0.032
Identities = 14/34 (41%), Positives = 17/34 (50%)
Frame = +1
Query: 448 IIACDMCGRGYHAKCHSPPVDAWINGASWHCKRC 549
++ CD C YH KC PP+ G W C RC
Sbjct: 23 LLCCDKCPMAYHLKCLIPPMMRVPTG-EWKCPRC 55
>SB_6618| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 574
Score = 34.7 bits (76), Expect = 0.074
Identities = 17/73 (23%), Positives = 33/73 (45%)
Frame = +1
Query: 331 WAPVSSLKLLSVPPADDGRIMCVVCKRREGPATGPATNAIIACDMCGRGYHAKCHSPPVD 510
W+ + K++ +D C VC + + ++ CD C +GYH +C + P++
Sbjct: 132 WSKIPVEKVIEEEEWEDEPTYCEVCHDCD------REDRLLLCDDCDKGYHMECLTSPLE 185
Query: 511 AWINGASWHCKRC 549
++ W C C
Sbjct: 186 -FVPIEEWFCPIC 197
>SB_5031| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 525
Score = 34.7 bits (76), Expect = 0.074
Identities = 19/66 (28%), Positives = 30/66 (45%)
Frame = +1
Query: 217 RYYLGTIIELSTSNDNDLCEVGASVARCLVKFGDGTHSWAPVSSLKLLSVPPADDGRIMC 396
+YY G I+E+ +SN RC V+F DG WA +++L A D +
Sbjct: 24 KYYAGRIVEVDSSNSQQ--------PRCHVQFDDGDKEWAEAGFIRMLPEVAAADLGVPS 75
Query: 397 VVCKRR 414
++ R
Sbjct: 76 IITNSR 81
Score = 32.3 bits (70), Expect = 0.40
Identities = 20/62 (32%), Positives = 32/62 (51%), Gaps = 1/62 (1%)
Frame = +1
Query: 217 RYYLGTIIELSTSNDNDLCEVGASVARCLVKFGDGTHSWAPVSSLKLLSVP-PADDGRIM 393
+YYLGT+ N + + E + VK+ DG SW V+ L+++ P PA + + M
Sbjct: 385 KYYLGTV---DAVNKDQMYE-----PQYHVKYDDGDESWVTVNQLRVIPAPGPAPESQFM 436
Query: 394 CV 399
V
Sbjct: 437 VV 438
>SB_6589| Best HMM Match : zf-C2H2 (HMM E-Value=1.2e-36)
Length = 651
Score = 33.1 bits (72), Expect = 0.23
Identities = 20/67 (29%), Positives = 34/67 (50%), Gaps = 9/67 (13%)
Frame = +1
Query: 376 DDGRIMCVVCKRREGPATG-------PATNAIIACDMCGRGYHAKCHSPPVDAWIN-GAS 531
+DG+I+C VCK+ A+ ++N AC+ C + +H K + +I+ G
Sbjct: 493 EDGKIVCTVCKKTXNRASNLYTHMRTHSSNKXHACEFCSKRFHQKA-DLRIHRYIHTGEK 551
Query: 532 WH-CKRC 549
H CK+C
Sbjct: 552 PHKCKKC 558
>SB_3579| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 290
Score = 33.1 bits (72), Expect = 0.23
Identities = 13/38 (34%), Positives = 18/38 (47%)
Frame = +1
Query: 436 ATNAIIACDMCGRGYHAKCHSPPVDAWINGASWHCKRC 549
A+ ++ CD C YH C PP+ I W C +C
Sbjct: 192 ASGELLMCDTCTLVYHLSCLDPPLTT-IPTGMWICPKC 228
>SB_57821| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 941
Score = 32.7 bits (71), Expect = 0.30
Identities = 13/36 (36%), Positives = 16/36 (44%)
Frame = +1
Query: 442 NAIIACDMCGRGYHAKCHSPPVDAWINGASWHCKRC 549
+ I+ CD C YH C PP+ I W C C
Sbjct: 228 DTILLCDKCDAAYHTACLRPPL-LTIPQGDWFCPFC 262
>SB_49644| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1615
Score = 32.3 bits (70), Expect = 0.40
Identities = 22/80 (27%), Positives = 32/80 (40%), Gaps = 2/80 (2%)
Frame = +1
Query: 352 KLLSVPPADDGRIMCVV--CKRREGPATGPATNAIIACDMCGRGYHAKCHSPPVDAWING 525
+L++V D+ C C R G G + CD C R YH C +
Sbjct: 1470 ELVNVEDDDEEEDPCAAASCSRPIGEEVG-----WVQCDQCERWYHLVCIGLSSERAEAL 1524
Query: 526 ASWHCKRCVDQRYRVAAAEN 585
S+HCK C Q + + E+
Sbjct: 1525 DSYHCKLCTGQVVNLTSTES 1544
>SB_19925| Best HMM Match : TUDOR (HMM E-Value=2)
Length = 263
Score = 32.3 bits (70), Expect = 0.40
Identities = 20/62 (32%), Positives = 32/62 (51%), Gaps = 1/62 (1%)
Frame = +1
Query: 217 RYYLGTIIELSTSNDNDLCEVGASVARCLVKFGDGTHSWAPVSSLKLLSVP-PADDGRIM 393
+YYLGT+ N + + E + VK+ DG SW V+ L+++ P PA + + M
Sbjct: 181 KYYLGTV---DAVNKDQMYE-----PQYHVKYDDGDESWVTVNQLRVIPAPGPAPESQFM 232
Query: 394 CV 399
V
Sbjct: 233 VV 234
>SB_5207| Best HMM Match : TUDOR (HMM E-Value=3.1)
Length = 364
Score = 32.3 bits (70), Expect = 0.40
Identities = 20/62 (32%), Positives = 32/62 (51%), Gaps = 1/62 (1%)
Frame = +1
Query: 217 RYYLGTIIELSTSNDNDLCEVGASVARCLVKFGDGTHSWAPVSSLKLLSVP-PADDGRIM 393
+YYLGT+ N + + E + VK+ DG SW V+ L+++ P PA + + M
Sbjct: 224 KYYLGTV---DAVNKDQMYE-----PQYHVKYDDGDESWVTVNQLRVIPAPGPAPESQFM 275
Query: 394 CV 399
V
Sbjct: 276 VV 277
>SB_50761| Best HMM Match : RCSD (HMM E-Value=4.4)
Length = 482
Score = 31.9 bits (69), Expect = 0.52
Identities = 19/51 (37%), Positives = 24/51 (47%)
Frame = +2
Query: 404 ASDARGLPLDRPPTLSSRATCVAEATTPNVTRPPSMPGSMVHHGIVKGVLT 556
AS AR P+ RP T S EA T N RPPS ++K +L+
Sbjct: 427 ASAAR--PVSRPQTQQSLYIPPTEALTQNAQRPPSHQSIKSQQSVIKSILS 475
>SB_6176| Best HMM Match : Bromo_TP (HMM E-Value=1.5e-23)
Length = 684
Score = 31.9 bits (69), Expect = 0.52
Identities = 16/49 (32%), Positives = 22/49 (44%), Gaps = 2/49 (4%)
Frame = +1
Query: 421 PATGPATNA--IIACDMCGRGYHAKCHSPPVDAWINGASWHCKRCVDQR 561
PA G A + +I CD C + YH C D G W+C C ++
Sbjct: 621 PACGFADDGSFMIGCDSCDKWYHGSCVGVLDDP---GGDWYCVHCTAKK 666
>SB_17346| Best HMM Match : PHD (HMM E-Value=2.1e-09)
Length = 238
Score = 31.9 bits (69), Expect = 0.52
Identities = 13/39 (33%), Positives = 20/39 (51%)
Frame = +1
Query: 448 IIACDMCGRGYHAKCHSPPVDAWINGASWHCKRCVDQRY 564
++ C+ CGR YH C P A W C+ CV++ +
Sbjct: 188 MVQCEACGRWYHCACVRVPPTA--VHKEWLCELCVNKAH 224
>SB_36259| Best HMM Match : PHD (HMM E-Value=5.3e-05)
Length = 790
Score = 31.5 bits (68), Expect = 0.69
Identities = 24/101 (23%), Positives = 38/101 (37%), Gaps = 4/101 (3%)
Frame = +1
Query: 358 LSVPPADDGRIMCVVCKRREGPATGPATNAIIACDMCGRGYHAKCHS---PPVDAWINGA 528
+S+ P + C +CK+ P + CD C HAKC P ++ N +
Sbjct: 82 ISLNPGPAWKYPCGLCKK---PVKSNQRG--LQCDSCNIWNHAKCMDISIPSYESLANSS 136
Query: 529 S-WHCKRCVDQRYRVAAAENRALKRSDLFRFKGGQPTKATA 648
W C +C + L+ S+ F F Q + A
Sbjct: 137 CLWLCPKCDASNFSETLLSASTLELSNSFNFLPSQTSSPVA 177
>SB_22901| Best HMM Match : PHD (HMM E-Value=5.3e-05)
Length = 696
Score = 31.5 bits (68), Expect = 0.69
Identities = 24/101 (23%), Positives = 38/101 (37%), Gaps = 4/101 (3%)
Frame = +1
Query: 358 LSVPPADDGRIMCVVCKRREGPATGPATNAIIACDMCGRGYHAKCHS---PPVDAWINGA 528
+S+ P + C +CK+ P + CD C HAKC P ++ N +
Sbjct: 86 ISLNPGPAWKYPCGLCKK---PVKSNQRG--LQCDSCNIWNHAKCMDISIPSYESLANSS 140
Query: 529 S-WHCKRCVDQRYRVAAAENRALKRSDLFRFKGGQPTKATA 648
W C +C + L+ S+ F F Q + A
Sbjct: 141 CLWLCPKCDASNFSKTLLSASTLELSNSFNFLPSQTSSPVA 181
>SB_21083| Best HMM Match : PHD (HMM E-Value=5.3e-05)
Length = 822
Score = 31.5 bits (68), Expect = 0.69
Identities = 24/101 (23%), Positives = 38/101 (37%), Gaps = 4/101 (3%)
Frame = +1
Query: 358 LSVPPADDGRIMCVVCKRREGPATGPATNAIIACDMCGRGYHAKCHS---PPVDAWINGA 528
+S+ P + C +CK+ P + CD C HAKC P ++ N +
Sbjct: 86 ISLNPGPAWKYPCGLCKK---PVKSNQRG--LQCDSCNIWNHAKCMDISIPSYESLANSS 140
Query: 529 S-WHCKRCVDQRYRVAAAENRALKRSDLFRFKGGQPTKATA 648
W C +C + L+ S+ F F Q + A
Sbjct: 141 CLWLCPKCDASNFSETLLSASTLELSNSFNFLPSQTSSPVA 181
>SB_39447| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2123
Score = 31.5 bits (68), Expect = 0.69
Identities = 24/101 (23%), Positives = 38/101 (37%), Gaps = 4/101 (3%)
Frame = +1
Query: 358 LSVPPADDGRIMCVVCKRREGPATGPATNAIIACDMCGRGYHAKCHS---PPVDAWINGA 528
+S+ P + C +CK+ P + CD C HAKC P ++ N +
Sbjct: 1233 ISLNPGPAWKYPCGLCKK---PVKSNQRG--LQCDSCNIWNHAKCMDISIPSYESLANSS 1287
Query: 529 S-WHCKRCVDQRYRVAAAENRALKRSDLFRFKGGQPTKATA 648
W C +C + L+ S+ F F Q + A
Sbjct: 1288 CLWLCPKCDASNFSETLLSASTLELSNSFNFLPSQTSSPVA 1328
>SB_24847| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 913
Score = 31.5 bits (68), Expect = 0.69
Identities = 24/101 (23%), Positives = 38/101 (37%), Gaps = 4/101 (3%)
Frame = +1
Query: 358 LSVPPADDGRIMCVVCKRREGPATGPATNAIIACDMCGRGYHAKCHS---PPVDAWINGA 528
+S+ P + C +CK+ P + CD C HAKC P ++ N +
Sbjct: 65 ISLNPGPAWKYPCGLCKK---PVKSNQRG--LQCDSCNIWNHAKCMDISIPSYESLANSS 119
Query: 529 S-WHCKRCVDQRYRVAAAENRALKRSDLFRFKGGQPTKATA 648
W C +C + L+ S+ F F Q + A
Sbjct: 120 CLWLCPKCDASNFSETLLSASTLELSNSFNFLPSQTSSPVA 160
>SB_10962| Best HMM Match : PHD (HMM E-Value=5.3e-05)
Length = 521
Score = 31.5 bits (68), Expect = 0.69
Identities = 24/101 (23%), Positives = 38/101 (37%), Gaps = 4/101 (3%)
Frame = +1
Query: 358 LSVPPADDGRIMCVVCKRREGPATGPATNAIIACDMCGRGYHAKCHS---PPVDAWINGA 528
+S+ P + C +CK+ P + CD C HAKC P ++ N +
Sbjct: 86 ISLNPGPAWKYPCGLCKK---PVKSNQRG--LQCDSCNIWNHAKCMDISIPSYESLANSS 140
Query: 529 S-WHCKRCVDQRYRVAAAENRALKRSDLFRFKGGQPTKATA 648
W C +C + L+ S+ F F Q + A
Sbjct: 141 CLWLCPKCDASNFSETLLSASTLELSNSFNFLPSQTSSPVA 181
>SB_23757| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2834
Score = 31.1 bits (67), Expect = 0.92
Identities = 15/55 (27%), Positives = 22/55 (40%)
Frame = +1
Query: 436 ATNAIIACDMCGRGYHAKCHSPPVDAWINGASWHCKRCVDQRYRVAAAENRALKR 600
AT + CD+C +H C + + W CK C ++ V E L R
Sbjct: 2773 ATRFYVGCDLCANWFHGACVNITPEEAAAMDHWSCKDCKREQQDVEQEEVYCLCR 2827
Score = 30.7 bits (66), Expect = 1.2
Identities = 11/34 (32%), Positives = 18/34 (52%)
Frame = +1
Query: 448 IIACDMCGRGYHAKCHSPPVDAWINGASWHCKRC 549
++ C++C YH +C PP++ G W C C
Sbjct: 279 LLCCEICPGVYHLQCLKPPLEQVPTG-DWLCPVC 311
>SB_43973| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 3142
Score = 31.1 bits (67), Expect = 0.92
Identities = 13/43 (30%), Positives = 21/43 (48%), Gaps = 5/43 (11%)
Frame = +1
Query: 451 IACDMCGRGYHAKCHSPPVDAWIN-----GASWHCKRCVDQRY 564
I CD CG+ HAKC S ++++ +W C C+ +
Sbjct: 225 ICCDECGQWTHAKCISMSYNSYLRYSNNPNLTWICSSCLSPNF 267
>SB_24946| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 822
Score = 30.7 bits (66), Expect = 1.2
Identities = 11/31 (35%), Positives = 17/31 (54%)
Frame = +1
Query: 448 IIACDMCGRGYHAKCHSPPVDAWINGASWHC 540
++ CD C G+H C +PP+ +G W C
Sbjct: 208 LVQCDFCPLGFHMDCINPPLTTPPSG-MWMC 237
Score = 29.9 bits (64), Expect = 2.1
Identities = 11/35 (31%), Positives = 16/35 (45%), Gaps = 1/35 (2%)
Frame = +1
Query: 448 IIACDMCGRGYHAKCHSPPVDA-WINGASWHCKRC 549
++ CD C +H C PP++ I W C C
Sbjct: 61 LLCCDQCPCAFHLSCCDPPLEEDDIPDGEWLCIEC 95
>SB_14389| Best HMM Match : PHD (HMM E-Value=0.0005)
Length = 82
Score = 30.7 bits (66), Expect = 1.2
Identities = 11/31 (35%), Positives = 17/31 (54%)
Frame = +1
Query: 448 IIACDMCGRGYHAKCHSPPVDAWINGASWHC 540
++ CD C G+H C +PP+ +G W C
Sbjct: 8 LVQCDFCPLGFHMDCINPPLTTPPSG-MWMC 37
>SB_10929| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 636
Score = 30.7 bits (66), Expect = 1.2
Identities = 12/37 (32%), Positives = 19/37 (51%), Gaps = 4/37 (10%)
Frame = +1
Query: 451 IACDMCGRGYHAKCHSPPVDAW--INGA--SWHCKRC 549
+ CD C + YH +C P + + +N + SW C C
Sbjct: 109 VQCDSCDKWYHVRCMDMPTEVYQGLNNSCTSWICCTC 145
>SB_39590| Best HMM Match : PHD (HMM E-Value=2.2e-18)
Length = 1284
Score = 30.3 bits (65), Expect = 1.6
Identities = 18/47 (38%), Positives = 20/47 (42%), Gaps = 13/47 (27%)
Frame = +1
Query: 448 IIACDMCGRGYHAKCHSP--PV------DAWINGASW-----HCKRC 549
++ CD C RGYH C P PV D W A W HC C
Sbjct: 875 LLMCDKCQRGYHVDCLGPSYPVVSEGSEDTWDPEAVWMHEFTHCYDC 921
>SB_38403| Best HMM Match : PP2C (HMM E-Value=8.5e-35)
Length = 916
Score = 30.3 bits (65), Expect = 1.6
Identities = 18/74 (24%), Positives = 36/74 (48%)
Frame = +1
Query: 85 ASKKNEKKEEETQDAMPDSTTSTEKNNANPFHCGDDVLVANKDGRYYLGTIIELSTSNDN 264
AS++ + EEE ++ + + E+ + G+ VLV + + Y GT ++ DN
Sbjct: 222 ASEEPQDGEEEEEEEEEEESEEEEEEEED--EDGEGVLVKSDEAGYDSGTTAIVALVKDN 279
Query: 265 DLCEVGASVARCLV 306
+L +RC++
Sbjct: 280 NLTVANVGDSRCVL 293
>SB_7292| Best HMM Match : RVT_1 (HMM E-Value=0)
Length = 1126
Score = 30.3 bits (65), Expect = 1.6
Identities = 18/70 (25%), Positives = 27/70 (38%), Gaps = 4/70 (5%)
Frame = +1
Query: 451 IACDMCGRGYHAKCHS---PPVDAWINGAS-WHCKRCVDQRYRVAAAENRALKRSDLFRF 618
+ CD C HAKC P ++ N + W C +C + L+ S+ F F
Sbjct: 94 LQCDSCNIWNHAKCMDISIPSYESLANSSCLWLCPKCDASNFSETLLSASTLELSNSFNF 153
Query: 619 KGGQPTKATA 648
Q + A
Sbjct: 154 LPSQTSSPVA 163
>SB_58672| Best HMM Match : PHD (HMM E-Value=3e-18)
Length = 458
Score = 30.3 bits (65), Expect = 1.6
Identities = 18/47 (38%), Positives = 20/47 (42%), Gaps = 13/47 (27%)
Frame = +1
Query: 448 IIACDMCGRGYHAKCHSP--PV------DAWINGASW-----HCKRC 549
++ CD C RGYH C P PV D W A W HC C
Sbjct: 216 LLMCDKCQRGYHVDCLGPSYPVVPEGSEDTWDPEAVWMHEFTHCYDC 262
>SB_33045| Best HMM Match : RVT_1 (HMM E-Value=3.4e-18)
Length = 1061
Score = 30.3 bits (65), Expect = 1.6
Identities = 24/101 (23%), Positives = 38/101 (37%), Gaps = 4/101 (3%)
Frame = +1
Query: 358 LSVPPADDGRIMCVVCKRREGPATGPATNAIIACDMCGRGYHAKCHS---PPVDAWINGA 528
+S+ P + C +CK+ P + CD C HAKC P ++ N +
Sbjct: 154 ISLNPGPAWKYPCGLCKK---PVKSNQRG--LQCDSCNIWNHAKCMDISIPSYESLANSS 208
Query: 529 S-WHCKRCVDQRYRVAAAENRALKRSDLFRFKGGQPTKATA 648
W C +C + L+ S+ F F Q + A
Sbjct: 209 CLWLCPKCDASNFSETLLSASTLELSNSFIFLPSQTSSPVA 249
>SB_9857| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1125
Score = 30.3 bits (65), Expect = 1.6
Identities = 11/34 (32%), Positives = 17/34 (50%)
Frame = +1
Query: 448 IIACDMCGRGYHAKCHSPPVDAWINGASWHCKRC 549
+I CD C R +H +C D ++ + W C C
Sbjct: 494 VILCDFCPRVFHKRCVR---DGAMSASKWRCPSC 524
>SB_5465| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 810
Score = 29.9 bits (64), Expect = 2.1
Identities = 12/37 (32%), Positives = 18/37 (48%), Gaps = 4/37 (10%)
Frame = +1
Query: 451 IACDMCGRGYHAKCHSPPVDAW--INGA--SWHCKRC 549
+ CD C + YH +C P + +N + SW C C
Sbjct: 107 VQCDSCDKWYHVRCMDTPTKVYQGLNNSYTSWICCTC 143
>SB_46602| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1805
Score = 29.9 bits (64), Expect = 2.1
Identities = 17/58 (29%), Positives = 28/58 (48%), Gaps = 1/58 (1%)
Frame = +1
Query: 4 DIKAEVSKQLSLIDELLRDLDKTITPCASK-KNEKKEEETQDAMPDSTTSTEKNNANP 174
D +++SK+ ++E L +LD+ + K K K++ QDAM KN P
Sbjct: 1023 DTNSKISKEKKTLEEKLNELDQALIDEEEKSKGLAKQKAKQDAMIADLEERLKNEERP 1080
>SB_9001| Best HMM Match : PHD (HMM E-Value=0.00096)
Length = 345
Score = 29.9 bits (64), Expect = 2.1
Identities = 18/70 (25%), Positives = 27/70 (38%), Gaps = 4/70 (5%)
Frame = +1
Query: 451 IACDMCGRGYHAKCHS---PPVDAWINGAS-WHCKRCVDQRYRVAAAENRALKRSDLFRF 618
+ CD C HAKC P ++ N + W C +C + L+ S+ F F
Sbjct: 112 LQCDSCNIWNHAKCMDISIPSYESLANSSCLWLCPKCDAYNFSETLLSASTLELSNSFNF 171
Query: 619 KGGQPTKATA 648
Q + A
Sbjct: 172 LPSQTSSPVA 181
>SB_6668| Best HMM Match : PHD (HMM E-Value=0.00096)
Length = 210
Score = 29.9 bits (64), Expect = 2.1
Identities = 18/70 (25%), Positives = 27/70 (38%), Gaps = 4/70 (5%)
Frame = +1
Query: 451 IACDMCGRGYHAKCHS---PPVDAWINGAS-WHCKRCVDQRYRVAAAENRALKRSDLFRF 618
+ CD C HAKC P ++ N + W C +C + L+ S+ F F
Sbjct: 112 LQCDSCNIWNHAKCMDISIPSYESLANSSCLWLCPKCDAYNFSETLLSASTLELSNSFNF 171
Query: 619 KGGQPTKATA 648
Q + A
Sbjct: 172 LPSQTSSPVA 181
>SB_14243| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1507
Score = 29.5 bits (63), Expect = 2.8
Identities = 24/94 (25%), Positives = 45/94 (47%)
Frame = +1
Query: 10 KAEVSKQLSLIDELLRDLDKTITPCASKKNEKKEEETQDAMPDSTTSTEKNNANPFHCGD 189
+ ++ Q S+ID + D + + ++NEK EEE +D D +++ + +
Sbjct: 1241 RVDMGLQTSIIDTSVVDEVSSQLSMSRQRNEKLEEELKDTKED--VQRRRSDMSALKRAN 1298
Query: 190 DVLVANKDGRYYLGTIIELSTSNDNDLCEVGASV 291
DVL+ ++ YL T E + N+L E A +
Sbjct: 1299 DVLI-KQNQTLYLET--ESLKATINELSEKSAQL 1329
>SB_44702| Best HMM Match : Pox_A_type_inc (HMM E-Value=0.03)
Length = 307
Score = 29.1 bits (62), Expect = 3.7
Identities = 17/40 (42%), Positives = 25/40 (62%)
Frame = +1
Query: 7 IKAEVSKQLSLIDELLRDLDKTITPCASKKNEKKEEETQD 126
++AE KQ+SLI +L D+ K+I + EK E+ET D
Sbjct: 122 LQAESRKQISLISKLKSDI-KSIKEQHDTEVEKLEKETSD 160
>SB_17974| Best HMM Match : PAN (HMM E-Value=0.004)
Length = 318
Score = 29.1 bits (62), Expect = 3.7
Identities = 18/52 (34%), Positives = 26/52 (50%), Gaps = 2/52 (3%)
Frame = +3
Query: 453 RVRHVWQRLPRQMSLA-PRRCL-DQWCIMAL*KVC*PKIQSSSSRKPGIETL 602
R RH +RL Q ++ +RCL WCI +V P+ + G+ETL
Sbjct: 44 RSRHAKKRLQAQSQISCSQRCLQQDWCISVNYEVSRPEAGACELNTYGVETL 95
>SB_33862| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 224
Score = 29.1 bits (62), Expect = 3.7
Identities = 15/57 (26%), Positives = 25/57 (43%)
Frame = +1
Query: 355 LLSVPPADDGRIMCVVCKRREGPATGPATNAIIACDMCGRGYHAKCHSPPVDAWING 525
+L+VP + C+ C+ EG A + C+ G+ +C+ VD W G
Sbjct: 12 MLTVPLVSG--LSCIQCQNTEGFGMCMKYRAFVECE----GWQDRCYKASVDTWYEG 62
>SB_17864| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 911
Score = 29.1 bits (62), Expect = 3.7
Identities = 17/68 (25%), Positives = 33/68 (48%)
Frame = +1
Query: 208 KDGRYYLGTIIELSTSNDNDLCEVGASVARCLVKFGDGTHSWAPVSSLKLLSVPPADDGR 387
+ G++YLG ++++ N + R VKF DG +W ++ ++ + P +
Sbjct: 260 RSGKHYLGRVVQVDYMNPH--------YPRYYVKFDDGDETWCNLNEIRPV---PLSRNQ 308
Query: 388 IMCVVCKR 411
+ CVV R
Sbjct: 309 VGCVVWGR 316
>SB_46889| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 754
Score = 28.7 bits (61), Expect = 4.9
Identities = 19/52 (36%), Positives = 26/52 (50%), Gaps = 2/52 (3%)
Frame = +3
Query: 453 RVRHVWQRLPRQMSLA-PRRCLDQ-WCIMAL*KVC*PKIQSSSSRKPGIETL 602
R RHV +RL Q ++ RC Q WCI +V P+ + G+ETL
Sbjct: 97 RSRHVKKRLQGQSQISCSLRCQQQDWCISVNYEVSRPEAGACELNTYGVETL 148
>SB_17329| Best HMM Match : S-antigen (HMM E-Value=0.31)
Length = 646
Score = 28.7 bits (61), Expect = 4.9
Identities = 13/37 (35%), Positives = 15/37 (40%)
Frame = +1
Query: 394 CVVCKRREGPATGPATNAIIACDMCGRGYHAKCHSPP 504
C C TGP T CD CG+ +C S P
Sbjct: 143 CTACGTHCKKTTGPCTACRDVCDRCGKA-RWRCESQP 178
>SB_14079| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 546
Score = 28.7 bits (61), Expect = 4.9
Identities = 19/52 (36%), Positives = 26/52 (50%), Gaps = 2/52 (3%)
Frame = +3
Query: 453 RVRHVWQRLPRQMSLA-PRRCLDQ-WCIMAL*KVC*PKIQSSSSRKPGIETL 602
R RHV +RL Q ++ RC Q WCI +V P+ + G+ETL
Sbjct: 44 RSRHVKKRLQGQSQISCSLRCQQQDWCISVNYEVSRPEAGACELNTYGVETL 95
>SB_59382| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 241
Score = 28.7 bits (61), Expect = 4.9
Identities = 15/36 (41%), Positives = 21/36 (58%)
Frame = +1
Query: 58 DLDKTITPCASKKNEKKEEETQDAMPDSTTSTEKNN 165
DL K I+ ASK++ K+ Q MPD T EK++
Sbjct: 44 DLHKRIS-AASKRSTKRPHRPQQKMPDLATVQEKSS 78
>SB_55139| Best HMM Match : PAN (HMM E-Value=0.055)
Length = 139
Score = 28.7 bits (61), Expect = 4.9
Identities = 19/52 (36%), Positives = 26/52 (50%), Gaps = 2/52 (3%)
Frame = +3
Query: 453 RVRHVWQRLPRQMSLA-PRRCLDQ-WCIMAL*KVC*PKIQSSSSRKPGIETL 602
R RHV +RL Q ++ RC Q WCI +V P+ + G+ETL
Sbjct: 22 RSRHVRKRLQGQSQISCSLRCQQQDWCISVNYEVSRPEAGACELNTYGVETL 73
>SB_40923| Best HMM Match : Pox_A_type_inc (HMM E-Value=0.29)
Length = 690
Score = 28.7 bits (61), Expect = 4.9
Identities = 16/42 (38%), Positives = 21/42 (50%), Gaps = 1/42 (2%)
Frame = +2
Query: 395 AWCASDARGLPLDRPPTL-SSRATCVAEATTPNVTRPPSMPG 517
AW ++A D PP+ SS A +A T TRP + PG
Sbjct: 152 AWSVNEADVSESDAPPSRPSSAAALYRQALTKQRTRPATAPG 193
>SB_20264| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 480
Score = 28.7 bits (61), Expect = 4.9
Identities = 19/52 (36%), Positives = 26/52 (50%), Gaps = 2/52 (3%)
Frame = +3
Query: 453 RVRHVWQRLPRQMSLA-PRRCLDQ-WCIMAL*KVC*PKIQSSSSRKPGIETL 602
R RHV +RL Q ++ RC Q WCI +V P+ + G+ETL
Sbjct: 55 RSRHVKKRLQGQSQISCSLRCQQQDWCISVNFEVSRPEAGACELNTYGVETL 106
>SB_18309| Best HMM Match : Exo_endo_phos (HMM E-Value=2.3e-09)
Length = 895
Score = 28.3 bits (60), Expect = 6.5
Identities = 11/39 (28%), Positives = 19/39 (48%), Gaps = 5/39 (12%)
Frame = +1
Query: 451 IACDMCGRGYHAKCHSPPVDAW-----INGASWHCKRCV 552
I CD C YH KC + ++ ++ +W C +C+
Sbjct: 121 IQCDECDMWYHTKCIAMTAQSYDRLGSVSQLAWLCNKCL 159
>SB_14778| Best HMM Match : MH1 (HMM E-Value=2.8026e-45)
Length = 1133
Score = 28.3 bits (60), Expect = 6.5
Identities = 10/25 (40%), Positives = 18/25 (72%)
Frame = +1
Query: 76 TPCASKKNEKKEEETQDAMPDSTTS 150
TPC+S+KN + ++D++P+ T S
Sbjct: 1074 TPCSSRKNSVESLLSEDSIPEETPS 1098
>SB_3140| Best HMM Match : C1_3 (HMM E-Value=7)
Length = 340
Score = 28.3 bits (60), Expect = 6.5
Identities = 15/48 (31%), Positives = 23/48 (47%), Gaps = 1/48 (2%)
Frame = -3
Query: 259 HYSYLTLLLFLNNIFHPYWPQVHHLRSGMG*HC-FSRC*LLSLALHPV 119
H ++ LF I+ + + H HC F+RC L +L +HPV
Sbjct: 24 HCAFTRCTLFALRIYPVHTLCIAHSPGAHSLHCAFTRCTLFALRIHPV 71
>SB_20744| Best HMM Match : CH (HMM E-Value=0.92)
Length = 1103
Score = 28.3 bits (60), Expect = 6.5
Identities = 21/63 (33%), Positives = 28/63 (44%), Gaps = 4/63 (6%)
Frame = -1
Query: 567 SVSLVNTPFTMP*CTIDPGIDGGRV-TFGV---VASATHVARDDSVGGRSSGRPLASLAH 400
+++ + + F +DP DGG + T GV V A S G SSGR L H
Sbjct: 436 TLTSIESSFQQQISPLDPQRDGGTLDTLGVRPRVELPQENASQSSSEGGSSGRSTPVLHH 495
Query: 399 HAH 391
H H
Sbjct: 496 HYH 498
>SB_2877| Best HMM Match : Hom_end (HMM E-Value=1.1)
Length = 1250
Score = 27.9 bits (59), Expect = 8.5
Identities = 14/43 (32%), Positives = 21/43 (48%)
Frame = +1
Query: 319 GTHSWAPVSSLKLLSVPPADDGRIMCVVCKRREGPATGPATNA 447
G H+ A + + +VP A G C +R GPA+ P +A
Sbjct: 299 GAHNMAGATRDQPRAVPAAKQGFRPCESARRGRGPASSPRAHA 341
>SB_58276| Best HMM Match : MIB_HERC2 (HMM E-Value=8.3e-33)
Length = 2822
Score = 27.9 bits (59), Expect = 8.5
Identities = 16/66 (24%), Positives = 29/66 (43%), Gaps = 3/66 (4%)
Frame = +1
Query: 79 PCASKKNEKKEEETQDAMPDSTT---STEKNNANPFHCGDDVLVANKDGRYYLGTIIELS 249
P E++ ++T+ D T ++E A P+H D +V N+D Y +
Sbjct: 643 PIKEITQEEEPQKTRSDKDDDTVQEDASELEQAKPYHWNDWCIVRNRDCLYMWNESCAIE 702
Query: 250 TSNDND 267
SN ++
Sbjct: 703 LSNGSN 708
>SB_32247| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2209
Score = 27.9 bits (59), Expect = 8.5
Identities = 23/76 (30%), Positives = 32/76 (42%), Gaps = 3/76 (3%)
Frame = +2
Query: 254 VMTTTCVRWAQA---WPDA*SSSATARTHGRQXXXXXXXXXXPPMTVASCAWCASDARGL 424
V TT C W ++ W A S+SAT + PP ++ SC L
Sbjct: 561 VATTPCSSWTRSVFSWMTA-STSATDPIASSKPLRFATSRRMPPSSLNSC---------L 610
Query: 425 PLDRPPTLSSRATCVA 472
LD+PP L TC++
Sbjct: 611 GLDQPPHLPRLRTCIS 626
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,866,638
Number of Sequences: 59808
Number of extensions: 483687
Number of successful extensions: 1803
Number of sequences better than 10.0: 61
Number of HSP's better than 10.0 without gapping: 1652
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1799
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1865706635
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -