Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0856
         (708 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    25   0.93 
DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chlor...    22   5.0  
EF540769-1|ABQ14707.1|  620|Apis mellifera adenosine deaminase p...    21   8.7  
DQ067178-1|AAZ20250.1|  448|Apis mellifera conserved ATPase doma...    21   8.7  

>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
           AbsCAM-Ig7A protein.
          Length = 1919

 Score = 24.6 bits (51), Expect = 0.93
 Identities = 13/38 (34%), Positives = 18/38 (47%)
 Frame = -2

Query: 434 GPVAGPSRRLHTTHMMRPSSAGGTLSSFSDDTGAHECV 321
           G   GPS R+H T+M + +S         D  G + CV
Sbjct: 649 GRAMGPSERVHVTNMDQYNSILMIEHLSPDHNGNYSCV 686


>DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 428

 Score = 22.2 bits (45), Expect = 5.0
 Identities = 8/22 (36%), Positives = 14/22 (63%)
 Frame = +2

Query: 137 TQQLAPRKTMLTHSTAEMMYLW 202
           TQ+   +   L+H+T EM++ W
Sbjct: 174 TQECKLQMESLSHTTDEMIFQW 195


>EF540769-1|ABQ14707.1|  620|Apis mellifera adenosine deaminase
           protein.
          Length = 620

 Score = 21.4 bits (43), Expect = 8.7
 Identities = 8/18 (44%), Positives = 11/18 (61%)
 Frame = +3

Query: 132 ARLNN*HREKQC*PIPLR 185
           A+L N H    C P+P+R
Sbjct: 213 AKLRNVHSSSFCIPLPVR 230


>DQ067178-1|AAZ20250.1|  448|Apis mellifera conserved ATPase domain
           protein protein.
          Length = 448

 Score = 21.4 bits (43), Expect = 8.7
 Identities = 8/42 (19%), Positives = 21/42 (50%)
 Frame = -1

Query: 528 CTIDPGIDGGRVTFGVVASATHVARDDSVGGRSSGRPLASLA 403
           C I   ++     + ++     ++R  ++  +++G PLA +A
Sbjct: 108 CNIQYALNPNTEEYYIIEVNARLSRSSALASKATGYPLAYVA 149


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 186,422
Number of Sequences: 438
Number of extensions: 4437
Number of successful extensions: 8
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 21804885
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)