Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brS-0856
(708 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At3g14740.2 68416.m01864 PHD finger family protein similar to zi... 48 8e-06
At3g14740.1 68416.m01863 PHD finger family protein similar to zi... 48 8e-06
At1g50620.1 68414.m05688 PHD finger family protein contains Pfam... 45 4e-05
At3g01460.1 68416.m00070 PHD finger family protein / methyl-CpG ... 42 5e-04
At2g36720.1 68415.m04505 PHD finger transcription factor, putative 42 5e-04
At5g09790.1 68418.m01133 PHD finger family protein / SET domain-... 40 0.001
At3g20280.2 68416.m02570 PHD finger family protein contains Pfam... 39 0.003
At3g20280.1 68416.m02569 PHD finger family protein contains Pfam... 39 0.003
At2g25170.1 68415.m03010 chromatin remodeling factor CHD3 (PICKL... 39 0.003
At5g44800.1 68418.m05492 chromodomain-helicase-DNA-binding famil... 38 0.007
At1g77250.1 68414.m08997 PHD finger family protein contains Pfam... 38 0.009
At4g12620.1 68417.m01988 replication control protein, putative s... 37 0.011
At4g29940.1 68417.m04259 pathogenesis-related homeodomain protei... 36 0.020
At5g40340.1 68418.m04894 PWWP domain-containing protein KED, Nic... 36 0.035
At5g63900.1 68418.m08023 PHD finger family protein contains Pfam... 33 0.14
At3g49900.1 68416.m05455 BTB/POZ domain-containing protein conta... 33 0.19
At3g04610.1 68416.m00493 KH domain-containing protein similar pu... 33 0.25
At4g14700.1 68417.m02259 replication control protein, putative s... 32 0.32
At3g08020.1 68416.m00979 PHD finger protein-related contains low... 32 0.32
At2g21850.1 68415.m02596 DC1 domain-containing protein contains ... 32 0.32
At5g24330.1 68418.m02867 PHD finger family protein / SET domain-... 32 0.43
At5g22760.1 68418.m02658 PHD finger family protein contains Pfam... 32 0.43
At3g56590.1 68416.m06293 hydroxyproline-rich glycoprotein family... 31 0.57
At3g19510.1 68416.m02472 homeobox protein (HAT 3.1) identical to... 31 0.57
At3g42790.1 68416.m04474 PHD finger family protein contains PHD-... 30 1.3
At5g35210.2 68418.m04175 peptidase M50 family protein / sterol-r... 30 1.7
At5g35210.1 68418.m04174 peptidase M50 family protein / sterol-r... 30 1.7
At5g12400.1 68418.m01458 PHD finger transcription factor, putati... 30 1.7
At1g05380.1 68414.m00546 PHD finger transcription factor, putative 30 1.7
At2g37520.1 68415.m04601 PHD finger family protein contains Pfam... 29 2.3
At2g31650.1 68415.m03864 trithorax 1 (ATX-1) (TRX1) identical to... 29 2.3
At5g19310.1 68418.m02301 homeotic gene regulator, putative simil... 29 3.0
At2g27980.1 68415.m03391 expressed protein 29 3.0
At2g19260.1 68415.m02248 ELM2 domain-containing protein / PHD fi... 29 3.0
At4g02650.1 68417.m00360 epsin N-terminal homology (ENTH) domain... 28 5.3
At3g55920.1 68416.m06214 peptidyl-prolyl cis-trans isomerase, pu... 28 5.3
At3g52100.1 68416.m05717 PHD finger family protein contains Pfam... 28 5.3
At3g14980.1 68416.m01894 PHD finger transcription factor, putati... 28 5.3
At2g04500.1 68415.m00455 DC1 domain-containing protein contains ... 28 5.3
At5g22010.1 68418.m02561 AAA-type ATPase family protein / BRCT d... 28 7.0
At5g05610.2 68418.m00611 PHD finger family protein contains Pfam... 28 7.0
At5g05610.1 68418.m00610 PHD finger family protein contains Pfam... 28 7.0
At3g57390.2 68416.m06389 MADS-box protein (AGL18) agamous-like p... 28 7.0
At3g57390.1 68416.m06388 MADS-box protein (AGL18) agamous-like p... 28 7.0
At3g11200.2 68416.m01359 PHD finger family protein contains Pfam... 28 7.0
At3g11200.1 68416.m01360 PHD finger family protein contains Pfam... 28 7.0
At1g14740.1 68414.m01762 expressed protein 28 7.0
At4g26630.1 68417.m03837 expressed protein 27 9.2
>At3g14740.2 68416.m01864 PHD finger family protein similar to
zinc-finger protein BR140 [PIR|JC2069][Homo sapiens];
contains PHD-finger domain PF00628
Length = 343
Score = 47.6 bits (108), Expect = 8e-06
Identities = 21/64 (32%), Positives = 31/64 (48%)
Frame = +1
Query: 376 DDGRIMCVVCKRREGPATGPATNAIIACDMCGRGYHAKCHSPPVDAWINGASWHCKRCVD 555
D+ IMC VC+ +G P I+ CD C HA C+ P+ I W C++C+
Sbjct: 147 DEDGIMCAVCQSTDGDPLNP----IVFCDGCDLMVHASCYGNPLVKAIPEGDWFCRQCLS 202
Query: 556 QRYR 567
+ R
Sbjct: 203 SKNR 206
>At3g14740.1 68416.m01863 PHD finger family protein similar to
zinc-finger protein BR140 [PIR|JC2069][Homo sapiens];
contains PHD-finger domain PF00628
Length = 341
Score = 47.6 bits (108), Expect = 8e-06
Identities = 21/64 (32%), Positives = 31/64 (48%)
Frame = +1
Query: 376 DDGRIMCVVCKRREGPATGPATNAIIACDMCGRGYHAKCHSPPVDAWINGASWHCKRCVD 555
D+ IMC VC+ +G P I+ CD C HA C+ P+ I W C++C+
Sbjct: 147 DEDGIMCAVCQSTDGDPLNP----IVFCDGCDLMVHASCYGNPLVKAIPEGDWFCRQCLS 202
Query: 556 QRYR 567
+ R
Sbjct: 203 SKNR 206
>At1g50620.1 68414.m05688 PHD finger family protein contains Pfam
domain, PF00628: PHD-finger
Length = 629
Score = 45.2 bits (102), Expect = 4e-05
Identities = 23/73 (31%), Positives = 36/73 (49%), Gaps = 1/73 (1%)
Frame = +1
Query: 337 PVSSLKLLSVPPADDGRIMCVVCKRREGPATGPATNAIIACDMCGRGYHAKC-HSPPVDA 513
P + LL PP+ + + C+ +G T ++ CD C +GYH KC H+ +
Sbjct: 302 PRAKQNLLWNPPSREYMSKAMTCQICQGTINEIET--VLICDACEKGYHLKCLHAHNIKG 359
Query: 514 WINGASWHCKRCV 552
+ + WHC RCV
Sbjct: 360 -VPKSEWHCSRCV 371
>At3g01460.1 68416.m00070 PHD finger family protein / methyl-CpG
binding domain-containing protein contains Pfam profiles
PF00628: PHD-finger (2 copies), PF01429: Methyl-CpG
binding domain
Length = 2176
Score = 41.5 bits (93), Expect = 5e-04
Identities = 31/103 (30%), Positives = 47/103 (45%), Gaps = 1/103 (0%)
Frame = +1
Query: 340 VSSLKLLSVPPADDGRIMCVVCKRREGPATGPATNAIIACDMCGRGYHAKCHSPPVDAWI 519
V S+ L P D+G +C VC ++++ CD C YH C +PP+ I
Sbjct: 1274 VVSVNKLPKAPWDEG--VCKVC------GVDKDDDSVLLCDTCDAEYHTYCLNPPL-IRI 1324
Query: 520 NGASWHCKRCV-DQRYRVAAAENRALKRSDLFRFKGGQPTKAT 645
+W+C CV +R A E+ L R R G+ T+A+
Sbjct: 1325 PDGNWYCPSCVIAKRMAQEALESYKLVRRRKGRKYQGELTRAS 1367
Score = 36.7 bits (81), Expect = 0.015
Identities = 19/60 (31%), Positives = 25/60 (41%)
Frame = +1
Query: 370 PADDGRIMCVVCKRREGPATGPATNAIIACDMCGRGYHAKCHSPPVDAWINGASWHCKRC 549
P D C C R E + ++ CD C RG+H C + V+A A W C C
Sbjct: 78 PEPDRDASCGACGRPE------SIELVVVCDACERGFHMSCVNDGVEA-APSADWMCSDC 130
>At2g36720.1 68415.m04505 PHD finger transcription factor, putative
Length = 1007
Score = 41.5 bits (93), Expect = 5e-04
Identities = 32/113 (28%), Positives = 47/113 (41%)
Frame = +1
Query: 313 GDGTHSWAPVSSLKLLSVPPADDGRIMCVVCKRREGPATGPATNAIIACDMCGRGYHAKC 492
G H WA S A+D +CV+C A G ++ CD C R +H +C
Sbjct: 593 GVSLHEWATTFSHGRKY--SANDNNDLCVIC------ADG---GNLLLCDSCPRAFHIEC 641
Query: 493 HSPPVDAWINGASWHCKRCVDQRYRVAAAENRALKRSDLFRFKGGQPTKATAG 651
S P I +WHCK C + ++ A + S + + +G P AG
Sbjct: 642 VSLPS---IPRGNWHCKYC-ENKFTSEIAGEYNVNSSAVGQLEGVDPVDQLAG 690
Score = 31.5 bits (68), Expect = 0.57
Identities = 13/35 (37%), Positives = 17/35 (48%)
Frame = +1
Query: 394 CVVCKRREGPATGPATNAIIACDMCGRGYHAKCHS 498
CV+C + +G II CD C + YH C S
Sbjct: 706 CVLCSGSDFCRSGFGPRTIIICDQCEKEYHIGCLS 740
>At5g09790.1 68418.m01133 PHD finger family protein / SET
domain-containing protein contains Pfam domain, PF00628:
PHD-finger and PF00856: SET domain
Length = 352
Score = 40.3 bits (90), Expect = 0.001
Identities = 21/59 (35%), Positives = 29/59 (49%)
Frame = +1
Query: 427 TGPATNAIIACDMCGRGYHAKCHSPPVDAWINGASWHCKRCVDQRYRVAAAENRALKRS 603
+G + ++ CD C RG+H KC P V + +W C C DQ R E R +RS
Sbjct: 72 SGEGDDELLLCDKCDRGFHMKCLRPIV-VRVPIGTWLCVDCSDQ--RPVRKETRKRRRS 127
>At3g20280.2 68416.m02570 PHD finger family protein contains Pfam
profile: PF00628 PHD-finger
Length = 482
Score = 39.1 bits (87), Expect = 0.003
Identities = 18/62 (29%), Positives = 28/62 (45%)
Frame = +1
Query: 367 PPADDGRIMCVVCKRREGPATGPATNAIIACDMCGRGYHAKCHSPPVDAWINGASWHCKR 546
PP+ + + C+ E T + ++ CD C + YH KC + + WHC R
Sbjct: 36 PPSREYMSRAMACQICE--VTINEMDTLLICDACEKAYHLKCLQGNNMKGVPKSEWHCSR 93
Query: 547 CV 552
CV
Sbjct: 94 CV 95
>At3g20280.1 68416.m02569 PHD finger family protein contains Pfam
profile: PF00628 PHD-finger
Length = 743
Score = 39.1 bits (87), Expect = 0.003
Identities = 18/62 (29%), Positives = 28/62 (45%)
Frame = +1
Query: 367 PPADDGRIMCVVCKRREGPATGPATNAIIACDMCGRGYHAKCHSPPVDAWINGASWHCKR 546
PP+ + + C+ E T + ++ CD C + YH KC + + WHC R
Sbjct: 297 PPSREYMSRAMACQICE--VTINEMDTLLICDACEKAYHLKCLQGNNMKGVPKSEWHCSR 354
Query: 547 CV 552
CV
Sbjct: 355 CV 356
>At2g25170.1 68415.m03010 chromatin remodeling factor CHD3 (PICKLE)
identical to chromatin remodeling factor CHD3
[Arabidopsis thaliana] GI:6478518
Length = 1384
Score = 39.1 bits (87), Expect = 0.003
Identities = 18/44 (40%), Positives = 27/44 (61%), Gaps = 1/44 (2%)
Frame = +1
Query: 424 ATGPATNAIIACDMCGRGYHAKCHSPPV-DAWINGASWHCKRCV 552
A G +TN +++C+ C +HAKC PP+ DA + +W C CV
Sbjct: 54 ACGESTN-LVSCNTCTYAFHAKCLVPPLKDASVE--NWRCPECV 94
>At5g44800.1 68418.m05492 chromodomain-helicase-DNA-binding family
protein / CHD family protein similar to chromatin
remodeling factor CHD3 (PICKLE) [Arabidopsis thaliana]
GI:6478518; contains Pfam profiles PF00271: Helicase
conserved C-terminal domain, PF00176: SNF2 family
N-terminal domain, PF00628: PHD-finger, PF00385:
'chromo' (CHRromatin Organization MOdifier)
Length = 2228
Score = 37.9 bits (84), Expect = 0.007
Identities = 14/34 (41%), Positives = 19/34 (55%)
Frame = +1
Query: 448 IIACDMCGRGYHAKCHSPPVDAWINGASWHCKRC 549
++ CD C R YH C +PP+ NG W C +C
Sbjct: 73 LLCCDSCPRTYHTACLNPPLKRIPNG-KWICPKC 105
>At1g77250.1 68414.m08997 PHD finger family protein contains Pfam
domain, PF00628: PHD-finger
Length = 522
Score = 37.5 bits (83), Expect = 0.009
Identities = 20/68 (29%), Positives = 28/68 (41%)
Frame = +1
Query: 448 IIACDMCGRGYHAKCHSPPVDAWINGASWHCKRCVDQRYRVAAAENRALKRSDLFRFKGG 627
I+ CD C YH C PP ++ NG W C C +V A K+ + + + G
Sbjct: 417 IVLCDGCDDAYHIYCMRPPCESVPNG-EWFCTACKAAILKVQKARKAFEKKMETVQKQKG 475
Query: 628 QPTKATAG 651
K G
Sbjct: 476 IKPKNLQG 483
Score = 28.7 bits (61), Expect = 4.0
Identities = 12/36 (33%), Positives = 17/36 (47%)
Frame = +1
Query: 451 IACDMCGRGYHAKCHSPPVDAWINGASWHCKRCVDQ 558
+ACD C YH C + P + SW+C C +
Sbjct: 256 LACDHCEDMYHVSC-AQPGGKGMPTHSWYCLDCTSK 290
>At4g12620.1 68417.m01988 replication control protein, putative
similar to origin recognition complex subunit 1
(Replication control protein 1)[Homo sapiens]
SWISS-PROT:Q13415
Length = 813
Score = 37.1 bits (82), Expect = 0.011
Identities = 16/37 (43%), Positives = 20/37 (54%)
Frame = +1
Query: 439 TNAIIACDMCGRGYHAKCHSPPVDAWINGASWHCKRC 549
TN +I CD C G+H KC PP+ G W C+ C
Sbjct: 177 TNIMIECDDCLGGFHLKCLKPPLKEVPEG-DWICQFC 212
>At4g29940.1 68417.m04259 pathogenesis-related homeodomain protein
(PRHA) identical to Pathogenesis-related homeodomain
protein (PRHA) (SP:P48785) [Arabidopsis thaliana)
Length = 796
Score = 36.3 bits (80), Expect = 0.020
Identities = 21/58 (36%), Positives = 24/58 (41%), Gaps = 4/58 (6%)
Frame = +1
Query: 388 IMCVVCKRREGPATGPATNAIIACD-MCGRGYHAKCHSPPVDAWI---NGASWHCKRC 549
I C C RE N II CD C R +H KC PP++ W CK C
Sbjct: 191 IFCAECNSREAFPD----NDIILCDGTCNRAFHQKCLDPPLETESIPPGDQGWFCKFC 244
>At5g40340.1 68418.m04894 PWWP domain-containing protein KED,
Nicotiana tabacum, EMBL:AB009883
Length = 1008
Score = 35.5 bits (78), Expect = 0.035
Identities = 26/91 (28%), Positives = 44/91 (48%), Gaps = 3/91 (3%)
Frame = +1
Query: 91 KKNEKKEEETQDAMPDSTTSTEKNNANPFHC-GDDVLVANKDGRYYLGTIIELSTSNDND 267
++ E++EE+ +D + E+ +C GD V K+ ++ G I + S ++D
Sbjct: 96 EEEEEEEEDGEDEEEEEEEEEEEEEEEHGYCVGDFVWGKIKNHPWWPGQIYDPSDASDLA 155
Query: 268 LC--EVGASVARCLVKFGDGTHSWAPVSSLK 354
L + G + C FGDGT +W S LK
Sbjct: 156 LKIKQKGKLLVAC---FGDGTFAWCGASQLK 183
>At5g63900.1 68418.m08023 PHD finger family protein contains Pfam
domain, PF00628: PHD-finger
Length = 557
Score = 33.5 bits (73), Expect = 0.14
Identities = 24/91 (26%), Positives = 35/91 (38%)
Frame = +1
Query: 268 LCEVGASVARCLVKFGDGTHSWAPVSSLKLLSVPPADDGRIMCVVCKRREGPATGPATNA 447
+C G + C DG S + L L S+P D C C G PA +
Sbjct: 261 VCHWGGDLLLC-----DGCPSAFHHACLGLSSLPEEDLWFCPCCCCDIC-GSMESPANSK 314
Query: 448 IIACDMCGRGYHAKCHSPPVDAWINGASWHC 540
++AC+ C R +H C ++ W C
Sbjct: 315 LMACEQCQRRFHLTCLKED-SCIVSSRGWFC 344
>At3g49900.1 68416.m05455 BTB/POZ domain-containing protein contains
BTB/POZ domain, INTERPRO:IPR000210
Length = 517
Score = 33.1 bits (72), Expect = 0.19
Identities = 22/83 (26%), Positives = 41/83 (49%)
Frame = +1
Query: 7 IKAEVSKQLSLIDELLRDLDKTITPCASKKNEKKEEETQDAMPDSTTSTEKNNANPFHCG 186
++A ++ S I+ L ++LD T+ SK++EK++ + S + + + FHC
Sbjct: 359 LRAAMNSTSSRIESLEKELD-TMKRFLSKESEKQKSDRNIVESRSRSVMDSARSASFHCV 417
Query: 187 DDVLVANKDGRYYLGTIIELSTS 255
NK R G++ LST+
Sbjct: 418 HQPSNVNKTQRGDRGSVSNLSTT 440
>At3g04610.1 68416.m00493 KH domain-containing protein similar
putative nucleic acid binding protein GB:CAB39665
[Arabidopsis thaliana]; Pfam HMM hit: KH domain family
of RNA binding proteins
Length = 577
Score = 32.7 bits (71), Expect = 0.25
Identities = 18/42 (42%), Positives = 23/42 (54%), Gaps = 1/42 (2%)
Frame = +2
Query: 428 LDRPPTLSSRATCVAEATTPNVTRPPSMPGSM-VHHGIVKGV 550
LD PP + RA V+ P + PPSM G + VH IV G+
Sbjct: 223 LDGPPGTTERAVMVSGKEEPESSLPPSMDGLLRVHMRIVDGL 264
>At4g14700.1 68417.m02259 replication control protein, putative
similar to origin recognition complex subunit 1
(Replication control protein 1) [Homo sapiens]
SWISS-PROT:Q13415
Length = 809
Score = 32.3 bits (70), Expect = 0.32
Identities = 16/38 (42%), Positives = 19/38 (50%), Gaps = 1/38 (2%)
Frame = +1
Query: 439 TNAI-IACDMCGRGYHAKCHSPPVDAWINGASWHCKRC 549
TN I I CD C G+H C PP+ G W C+ C
Sbjct: 174 TNTIMIECDDCLGGFHLNCLKPPLKEVPEG-DWICQFC 210
>At3g08020.1 68416.m00979 PHD finger protein-related contains low
similarity to PHD-finger domain proteins
Length = 764
Score = 32.3 bits (70), Expect = 0.32
Identities = 17/56 (30%), Positives = 25/56 (44%), Gaps = 2/56 (3%)
Frame = +1
Query: 388 IMCVVCKRREGPATGPATNAIIACDMCGRGYHAKCHSPPVD--AWINGASWHCKRC 549
IMC +C EG + A +++C CG+ YH C + +SW C C
Sbjct: 146 IMCRMCFLGEGEGSDRARR-MLSCKDCGKKYHKNCLKSWAQHRDLFHWSSWSCPSC 200
Score = 29.5 bits (63), Expect = 2.3
Identities = 13/38 (34%), Positives = 16/38 (42%)
Frame = +1
Query: 391 MCVVCKRREGPATGPATNAIIACDMCGRGYHAKCHSPP 504
+C VC+R P N + C C YH C PP
Sbjct: 202 VCEVCRRTGDP------NKFMFCKRCDAAYHCYCQHPP 233
>At2g21850.1 68415.m02596 DC1 domain-containing protein contains
Pfam profile PF03107: DC1 domain
Length = 772
Score = 32.3 bits (70), Expect = 0.32
Identities = 11/33 (33%), Positives = 18/33 (54%)
Frame = +1
Query: 394 CVVCKRREGPATGPATNAIIACDMCGRGYHAKC 492
C +C R G ++N + +C CG+ +H KC
Sbjct: 651 CFLCGERIVGKFGKSSNVLYSCKHCGKEFHLKC 683
>At5g24330.1 68418.m02867 PHD finger family protein / SET
domain-containing protein contains Pfam domain, PF00628:
PHD-finger and PF00856: SET domain
Length = 349
Score = 31.9 bits (69), Expect = 0.43
Identities = 13/42 (30%), Positives = 21/42 (50%)
Frame = +1
Query: 424 ATGPATNAIIACDMCGRGYHAKCHSPPVDAWINGASWHCKRC 549
++G ++ CD C +G+H C P + + G SW C C
Sbjct: 39 SSGKQPAKLLLCDKCDKGFHLFCLRPILVSVPKG-SWFCPSC 79
>At5g22760.1 68418.m02658 PHD finger family protein contains Pfam
domain, PF00628: PHD-finger
Length = 1566
Score = 31.9 bits (69), Expect = 0.43
Identities = 17/57 (29%), Positives = 23/57 (40%)
Frame = +1
Query: 379 DGRIMCVVCKRREGPATGPATNAIIACDMCGRGYHAKCHSPPVDAWINGASWHCKRC 549
+ I C +CK E GP + C C H+ C ++ G SW C RC
Sbjct: 1513 ENTIPCQICKHVE---PGPD----LTCQTCNMTIHSHCSPWEEESTCIGGSWRCGRC 1562
Score = 30.7 bits (66), Expect = 0.99
Identities = 11/34 (32%), Positives = 17/34 (50%)
Frame = +1
Query: 448 IIACDMCGRGYHAKCHSPPVDAWINGASWHCKRC 549
++ CD C YH++C V +I W+C C
Sbjct: 425 LLCCDGCPLAYHSRCIG-VVKMYIPDGPWYCPEC 457
>At3g56590.1 68416.m06293 hydroxyproline-rich glycoprotein family
protein
Length = 477
Score = 31.5 bits (68), Expect = 0.57
Identities = 9/15 (60%), Positives = 13/15 (86%)
Frame = -1
Query: 663 GGVSSCCCLRWLSSF 619
GG+S+CCC W+SS+
Sbjct: 26 GGISTCCCCDWISSY 40
>At3g19510.1 68416.m02472 homeobox protein (HAT 3.1) identical to
homeotic protein HAT 3.1 (GI:11994474) [Arabidopsis
thaliana]
Length = 723
Score = 31.5 bits (68), Expect = 0.57
Identities = 16/40 (40%), Positives = 19/40 (47%), Gaps = 4/40 (10%)
Frame = +1
Query: 442 NAIIACD-MCGRGYHAKCHSPPV---DAWINGASWHCKRC 549
N II CD C RG+H C PP+ D + W C C
Sbjct: 280 NDIILCDGFCDRGFHQYCLEPPLRKEDIPPDDEGWLCPGC 319
>At3g42790.1 68416.m04474 PHD finger family protein contains
PHD-finger domain, INTERPRO:IPR001965
Length = 250
Score = 30.3 bits (65), Expect = 1.3
Identities = 17/64 (26%), Positives = 26/64 (40%)
Frame = +1
Query: 376 DDGRIMCVVCKRREGPATGPATNAIIACDMCGRGYHAKCHSPPVDAWINGASWHCKRCVD 555
D G +C C +G A I CD+C + +H KC + + C C +
Sbjct: 191 DHGETLCGACGDSDG-----ADEFWICCDLCEKWFHGKCVKITPARAEHIKQYKCPSCSN 245
Query: 556 QRYR 567
+R R
Sbjct: 246 KRAR 249
>At5g35210.2 68418.m04175 peptidase M50 family protein /
sterol-regulatory element binding protein (SREBP) site 2
protease family protein contains PFam PF02163:
sterol-regulatory element binding protein (SREBP) site 2
protease
Length = 1409
Score = 29.9 bits (64), Expect = 1.7
Identities = 13/50 (26%), Positives = 21/50 (42%)
Frame = +1
Query: 448 IIACDMCGRGYHAKCHSPPVDAWINGASWHCKRCVDQRYRVAAAENRALK 597
++ CD C YH++C V +I W C C + A +L+
Sbjct: 423 LLCCDGCPLAYHSRCIG-VVKMYIPDGPWFCPECTINKKGPKIAHGTSLR 471
>At5g35210.1 68418.m04174 peptidase M50 family protein /
sterol-regulatory element binding protein (SREBP) site 2
protease family protein contains PFam PF02163:
sterol-regulatory element binding protein (SREBP) site 2
protease
Length = 1576
Score = 29.9 bits (64), Expect = 1.7
Identities = 13/50 (26%), Positives = 21/50 (42%)
Frame = +1
Query: 448 IIACDMCGRGYHAKCHSPPVDAWINGASWHCKRCVDQRYRVAAAENRALK 597
++ CD C YH++C V +I W C C + A +L+
Sbjct: 423 LLCCDGCPLAYHSRCIG-VVKMYIPDGPWFCPECTINKKGPKIAHGTSLR 471
>At5g12400.1 68418.m01458 PHD finger transcription factor, putative
similarity to predicted proteins, Arabidopsis thaliana
Length = 1595
Score = 29.9 bits (64), Expect = 1.7
Identities = 12/39 (30%), Positives = 17/39 (43%)
Frame = +1
Query: 445 AIIACDMCGRGYHAKCHSPPVDAWINGASWHCKRCVDQR 561
+++ CD C YH+KC G W+C C R
Sbjct: 619 SLLCCDGCPAAYHSKCVGLASHLLPEG-DWYCPECAFDR 656
>At1g05380.1 68414.m00546 PHD finger transcription factor, putative
Length = 600
Score = 29.9 bits (64), Expect = 1.7
Identities = 12/34 (35%), Positives = 14/34 (41%)
Frame = +1
Query: 448 IIACDMCGRGYHAKCHSPPVDAWINGASWHCKRC 549
+I CD C YH C V + WHC C
Sbjct: 99 LICCDGCPSTYHQNCLGMQV---LPSGDWHCPNC 129
>At2g37520.1 68415.m04601 PHD finger family protein contains Pfam
domain, PF00628: PHD-finger
Length = 854
Score = 29.5 bits (63), Expect = 2.3
Identities = 13/47 (27%), Positives = 21/47 (44%)
Frame = +1
Query: 352 KLLSVPPADDGRIMCVVCKRREGPATGPATNAIIACDMCGRGYHAKC 492
+++ P +D G CV C+ + +I CD C + YH C
Sbjct: 563 RVVKAPESDIGG--CVFCRSHDFSIGKFDDRTVILCDQCEKEYHVGC 607
>At2g31650.1 68415.m03864 trithorax 1 (ATX-1) (TRX1) identical to
trithorax-like protein 1 GI:12659210 from [Arabidopsis
thaliana]; characterized in Alvarez-Venegas R,et al,
ATX-1, an Arabidopsis Homolog of Trithorax, Activates
Flower Homeotic Genes.(Curr Biol. 2003 Apr
15;13(8):627-37 PMID: 12699618); contains Pfam profiles
PF00856: SET domain, PF00855: PWWP domain, PF00628,
PHD-finger; identical to cDNA trithorax-like protein 1
(TRX1) GI:12659209
Length = 1062
Score = 29.5 bits (63), Expect = 2.3
Identities = 13/36 (36%), Positives = 16/36 (44%)
Frame = +1
Query: 442 NAIIACDMCGRGYHAKCHSPPVDAWINGASWHCKRC 549
N + CD C HAKC+ +GA W C C
Sbjct: 624 NLFLQCDKCRMMVHAKCYGELEPC--DGALWLCNLC 657
>At5g19310.1 68418.m02301 homeotic gene regulator, putative similar to
SP|P25439 Homeotic gene regulator (Brahma protein)
{Drosophila melanogaster}; contains Pfam profiles
PF00271: Helicase conserved C-terminal domain, PF00176:
SNF2 family N-terminal domain
Length = 1064
Score = 29.1 bits (62), Expect = 3.0
Identities = 11/31 (35%), Positives = 19/31 (61%)
Frame = +1
Query: 88 SKKNEKKEEETQDAMPDSTTSTEKNNANPFH 180
S+ +E+KEEE ++ +S +E+ N P H
Sbjct: 1001 SESDEEKEEEEEERKEESGKESEEENEKPLH 1031
>At2g27980.1 68415.m03391 expressed protein
Length = 1037
Score = 29.1 bits (62), Expect = 3.0
Identities = 10/34 (29%), Positives = 16/34 (47%)
Frame = +1
Query: 391 MCVVCKRREGPATGPATNAIIACDMCGRGYHAKC 492
+CV+C+ G +I CD C + +H C
Sbjct: 751 VCVLCRGHSFCRLGFNARTVIICDQCEKEFHVGC 784
>At2g19260.1 68415.m02248 ELM2 domain-containing protein / PHD
finger family protein contains Pfam profiles: PF01448
ELM2 domain, PF00628 PHD-finger
Length = 631
Score = 29.1 bits (62), Expect = 3.0
Identities = 13/50 (26%), Positives = 19/50 (38%)
Frame = +1
Query: 403 CKRREGPATGPATNAIIACDMCGRGYHAKCHSPPVDAWINGASWHCKRCV 552
CK + P T ++ CD C YH +C + W C C+
Sbjct: 412 CKHCDKPGT---VEKMLICDECEEAYHTRCCGVQMKDVAEIDEWLCPSCL 458
>At4g02650.1 68417.m00360 epsin N-terminal homology (ENTH)
domain-containing protein / clathrin assembly
protein-related contains Pfam PF01417: ENTH domain. ENTH
(Epsin N-terminal homology) domain; similar to Chain A,
Calm-N N-Terminal Domain Of Clathrin Assembly Lymphoid
Myeloid Leukaemia Protein, Pi(4,5)p2 Complex
(GP:13399999) {Homo sapiens}; supporting cDNA
gi|26451912|dbj|AK118440.1|
Length = 611
Score = 28.3 bits (60), Expect = 5.3
Identities = 15/41 (36%), Positives = 24/41 (58%), Gaps = 3/41 (7%)
Frame = +1
Query: 4 DIKAEVSKQLSLIDELLRD---LDKTITPCASKKNEKKEEE 117
+++ K+L L+DE +RD L T +SK++ K EEE
Sbjct: 311 ELEKITQKKLDLMDEFIRDKSALAAQTTKSSSKRSNKSEEE 351
>At3g55920.1 68416.m06214 peptidyl-prolyl cis-trans isomerase,
putative / cyclophilin, putative / rotamase, putative
similar to cyclophilin [Arabidopsis thaliana]
gi|2443755|gb|AAB71401
Length = 228
Score = 28.3 bits (60), Expect = 5.3
Identities = 14/35 (40%), Positives = 18/35 (51%)
Frame = -1
Query: 510 IDGGRVTFGVVASATHVARDDSVGGRSSGRPLASL 406
+DG V FG V S V R G+ SG P A++
Sbjct: 184 LDGHHVVFGKVLSGMEVVRKIEAQGQDSGVPKANV 218
>At3g52100.1 68416.m05717 PHD finger family protein contains Pfam
profile PF00628: PHD-finger
Length = 696
Score = 28.3 bits (60), Expect = 5.3
Identities = 13/40 (32%), Positives = 19/40 (47%), Gaps = 6/40 (15%)
Frame = +1
Query: 448 IIACDMCGRGYHAKCHSPPVDAW------INGASWHCKRC 549
+++C CG+ YH C V +W N +SW C C
Sbjct: 178 MLSCKCCGKKYHRNC----VKSWAQHRDLFNWSSWACPSC 213
>At3g14980.1 68416.m01894 PHD finger transcription factor, putative
contains Pfam profile: PF00628 PHD-finger
Length = 1189
Score = 28.3 bits (60), Expect = 5.3
Identities = 12/34 (35%), Positives = 16/34 (47%)
Frame = +1
Query: 448 IIACDMCGRGYHAKCHSPPVDAWINGASWHCKRC 549
+I CD C +H C S V + SW+C C
Sbjct: 738 LICCDNCPSTFHQACLSMQV---LPEGSWYCSSC 768
>At2g04500.1 68415.m00455 DC1 domain-containing protein contains
Pfam profile PF03107: DC1 domain
Length = 495
Score = 28.3 bits (60), Expect = 5.3
Identities = 13/39 (33%), Positives = 18/39 (46%)
Frame = +1
Query: 376 DDGRIMCVVCKRREGPATGPATNAIIACDMCGRGYHAKC 492
D G + C +C+ + P+ T CD CG H KC
Sbjct: 385 DTGHLWCDICETKTDPSVFYYT-----CDDCGVSLHLKC 418
>At5g22010.1 68418.m02561 AAA-type ATPase family protein / BRCT
domain-containing protein contains Pfam profiles:
PF00533 BRCA1 C Terminus (BRCT) domain, PF00004 ATPase
family associated with various cellular activities (AAA)
Length = 956
Score = 27.9 bits (59), Expect = 7.0
Identities = 11/26 (42%), Positives = 16/26 (61%)
Frame = -1
Query: 504 GGRVTFGVVASATHVARDDSVGGRSS 427
GGR+T V T++ D+ +GGR S
Sbjct: 234 GGRITGSVSKKTTYLLCDEDIGGRKS 259
>At5g05610.2 68418.m00611 PHD finger family protein contains Pfam
domain, PF00628: PHD-finger
Length = 241
Score = 27.9 bits (59), Expect = 7.0
Identities = 9/14 (64%), Positives = 10/14 (71%)
Frame = +1
Query: 451 IACDMCGRGYHAKC 492
I CD+C R YH KC
Sbjct: 202 ICCDVCERWYHGKC 215
>At5g05610.1 68418.m00610 PHD finger family protein contains Pfam
domain, PF00628: PHD-finger
Length = 241
Score = 27.9 bits (59), Expect = 7.0
Identities = 9/14 (64%), Positives = 10/14 (71%)
Frame = +1
Query: 451 IACDMCGRGYHAKC 492
I CD+C R YH KC
Sbjct: 202 ICCDVCERWYHGKC 215
>At3g57390.2 68416.m06389 MADS-box protein (AGL18) agamous-like
protein 15 - Arabidopsis thaliana, PIR:S71200
Length = 195
Score = 27.9 bits (59), Expect = 7.0
Identities = 12/34 (35%), Positives = 20/34 (58%)
Frame = +1
Query: 97 NEKKEEETQDAMPDSTTSTEKNNANPFHCGDDVL 198
NE+ ++ + +A P+S++S E N N H D L
Sbjct: 130 NERPQDSSPEADPESSSSEEDENDNEEHHSDTSL 163
>At3g57390.1 68416.m06388 MADS-box protein (AGL18) agamous-like
protein 15 - Arabidopsis thaliana, PIR:S71200
Length = 256
Score = 27.9 bits (59), Expect = 7.0
Identities = 12/34 (35%), Positives = 20/34 (58%)
Frame = +1
Query: 97 NEKKEEETQDAMPDSTTSTEKNNANPFHCGDDVL 198
NE+ ++ + +A P+S++S E N N H D L
Sbjct: 191 NERPQDSSPEADPESSSSEEDENDNEEHHSDTSL 224
>At3g11200.2 68416.m01359 PHD finger family protein contains Pfam
domain, PF00628: PHD-finger
Length = 233
Score = 27.9 bits (59), Expect = 7.0
Identities = 9/14 (64%), Positives = 10/14 (71%)
Frame = +1
Query: 451 IACDMCGRGYHAKC 492
I CD+C R YH KC
Sbjct: 194 ICCDVCERWYHGKC 207
>At3g11200.1 68416.m01360 PHD finger family protein contains Pfam
domain, PF00628: PHD-finger
Length = 246
Score = 27.9 bits (59), Expect = 7.0
Identities = 9/14 (64%), Positives = 10/14 (71%)
Frame = +1
Query: 451 IACDMCGRGYHAKC 492
I CD+C R YH KC
Sbjct: 207 ICCDVCERWYHGKC 220
>At1g14740.1 68414.m01762 expressed protein
Length = 733
Score = 27.9 bits (59), Expect = 7.0
Identities = 30/104 (28%), Positives = 44/104 (42%), Gaps = 3/104 (2%)
Frame = +1
Query: 190 DVLVANKDG-RYYLGTIIELSTSNDNDLCEVGASVARCLVKFGDGTHSWAPVSSL--KLL 360
D+LVA + G +Y+L I + N+L E+ + RC S PV K+
Sbjct: 375 DILVAVRTGLKYFLSGKIRIPM---NELVEIFLFL-RCR---NVNCKSLLPVDDCECKIC 427
Query: 361 SVPPADDGRIMCVVCKRREGPATGPATNAIIACDMCGRGYHAKC 492
S MC VC R + + T + + CD+C HA C
Sbjct: 428 SNNKGFCSSCMCPVCLRFDSASN---TCSWVGCDVCSHWCHAAC 468
>At4g26630.1 68417.m03837 expressed protein
Length = 763
Score = 27.5 bits (58), Expect = 9.2
Identities = 10/20 (50%), Positives = 15/20 (75%)
Frame = +1
Query: 85 ASKKNEKKEEETQDAMPDST 144
A +K EKKEEE ++ +PD +
Sbjct: 538 AEEKEEKKEEENENGIPDKS 557
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,704,748
Number of Sequences: 28952
Number of extensions: 307591
Number of successful extensions: 1263
Number of sequences better than 10.0: 48
Number of HSP's better than 10.0 without gapping: 1197
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1257
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1526202912
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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