Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0854
         (647 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

X72339-1|CAA51066.1|  133|Tribolium castaneum abdominal protein.       22   5.0  
AM292363-1|CAL23175.2|  347|Tribolium castaneum gustatory recept...    22   5.0  
AF017415-2|AAB70263.1|  284|Tribolium castaneum abdominal-A prot...    22   5.0  
AF017415-1|AAB70262.1|  343|Tribolium castaneum abdominal-AII pr...    22   5.0  
AM292375-1|CAL23187.2|  311|Tribolium castaneum gustatory recept...    21   6.6  
AM292367-1|CAL23179.2| 1451|Tribolium castaneum gustatory recept...    21   8.7  

>X72339-1|CAA51066.1|  133|Tribolium castaneum abdominal protein.
          Length = 133

 Score = 21.8 bits (44), Expect = 5.0
 Identities = 12/38 (31%), Positives = 18/38 (47%)
 Frame = +1

Query: 178 KKHKDEKSVWIIIHNDVYDVTKFLEEHPGGADSLLEVA 291
           K+ K E+     IH   +D  K   +  GG+D L  V+
Sbjct: 92  KQQKIEQQTHSSIHQHHHDPMKMSLDKSGGSDLLKAVS 129


>AM292363-1|CAL23175.2|  347|Tribolium castaneum gustatory receptor
           candidate 42 protein.
          Length = 347

 Score = 21.8 bits (44), Expect = 5.0
 Identities = 5/15 (33%), Positives = 12/15 (80%)
 Frame = -3

Query: 249 QKLSHVVNIIMNDYP 205
           + +S  +N+++N+YP
Sbjct: 297 KNISEFINVVLNNYP 311


>AF017415-2|AAB70263.1|  284|Tribolium castaneum abdominal-A
           protein.
          Length = 284

 Score = 21.8 bits (44), Expect = 5.0
 Identities = 12/38 (31%), Positives = 18/38 (47%)
 Frame = +1

Query: 178 KKHKDEKSVWIIIHNDVYDVTKFLEEHPGGADSLLEVA 291
           K+ K E+     IH   +D  K   +  GG+D L  V+
Sbjct: 243 KQQKIEQQTHSSIHQHHHDPMKMSLDKSGGSDLLKAVS 280


>AF017415-1|AAB70262.1|  343|Tribolium castaneum abdominal-AII
           protein.
          Length = 343

 Score = 21.8 bits (44), Expect = 5.0
 Identities = 12/38 (31%), Positives = 18/38 (47%)
 Frame = +1

Query: 178 KKHKDEKSVWIIIHNDVYDVTKFLEEHPGGADSLLEVA 291
           K+ K E+     IH   +D  K   +  GG+D L  V+
Sbjct: 302 KQQKIEQQTHSSIHQHHHDPMKMSLDKSGGSDLLKAVS 339


>AM292375-1|CAL23187.2|  311|Tribolium castaneum gustatory receptor
           candidate 54 protein.
          Length = 311

 Score = 21.4 bits (43), Expect = 6.6
 Identities = 8/18 (44%), Positives = 12/18 (66%)
 Frame = -1

Query: 440 ATTAHFNFEQSVMILHLS 387
           A+   F FE++  I+HLS
Sbjct: 199 ASKKQFTFEETFAIIHLS 216


>AM292367-1|CAL23179.2| 1451|Tribolium castaneum gustatory receptor
            candidate 46 protein.
          Length = 1451

 Score = 21.0 bits (42), Expect = 8.7
 Identities = 11/39 (28%), Positives = 21/39 (53%)
 Frame = +3

Query: 516  LRESDDLKSDYQMLMNTE*Y*NVLKYCYVIFEMFYSLCK 632
            L+E+D L+  Y + ++T    NV+  C+V +     + K
Sbjct: 900  LQENDWLQLGYLIFVSTLYTANVVCICHVCYSTIQEVSK 938


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 140,764
Number of Sequences: 336
Number of extensions: 3058
Number of successful extensions: 8
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 16656800
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)