Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0854
         (647 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC16A11.10c |oca8||cytochrome b5 |Schizosaccharomyces pombe|ch...    92   7e-20
SPBC29A10.16c |||cytochrome b5 |Schizosaccharomyces pombe|chr 2|...    83   3e-17
SPAC1F12.10c |||NADPH-hemoprotein reductase |Schizosaccharomyces...    52   5e-08
SPCC330.03c |||NADPH-hemoprotein reductase|Schizosaccharomyces p...    47   3e-06
SPCC1281.06c |||acyl-coA desaturase |Schizosaccharomyces pombe|c...    42   6e-05
SPCC622.15c |||sequence orphan|Schizosaccharomyces pombe|chr 3||...    33   0.027
SPCC737.09c |hmt1|SPCC74.08c|ATP-binding cassette-type vacuolar ...    27   2.3  
SPCC1827.07c ||SPCP1E11.01c|SPX/EXS domain protein|Schizosacchar...    27   3.1  
SPBC16C6.02c |vps1302|vps13b|chorein homolog|Schizosaccharomyces...    27   3.1  
SPAC27F1.07 |||dolichyl-diphospho-oligosaccharide-protein glycos...    26   4.1  
SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||...    25   7.1  

>SPCC16A11.10c |oca8||cytochrome b5 |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 129

 Score = 91.9 bits (218), Expect = 7e-20
 Identities = 37/75 (49%), Positives = 58/75 (77%)
 Frame = +1

Query: 154 KNLTLDEVKKHKDEKSVWIIIHNDVYDVTKFLEEHPGGADSLLEVAGKDGTQAFEDVGHS 333
           K +T++EV KH     ++I++ + VYD++KFL+ HPGG + L+++AG+D +  FEDVGHS
Sbjct: 4   KTITVEEVLKHNTRDDLYIVVKDKVYDISKFLDAHPGGEEVLVDLAGRDASGPFEDVGHS 63

Query: 334 DDARELLKKYKIGTL 378
           +DA+ELL+K+ IG L
Sbjct: 64  EDAQELLEKFYIGNL 78


>SPBC29A10.16c |||cytochrome b5 |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 124

 Score = 83.0 bits (196), Expect = 3e-17
 Identities = 36/79 (45%), Positives = 57/79 (72%), Gaps = 2/79 (2%)
 Frame = +1

Query: 169 DEVKKHKDEKSVWIIIHNDVYDVTKFLEEHPGGADSLLEVAGKDGTQAFEDVGHSDDARE 348
           +E+ +H + K ++++I+  VYDV+ F ++HPGG D +L+ AG+D T+A++D+GHS  A E
Sbjct: 9   EEIVEHNNSKDMYMVINGKVYDVSNFADDHPGGLDIMLDYAGQDATKAYQDIGHSIAADE 68

Query: 349 LLKKYKIGTLPPG--ERCK 399
           LL++  IG L PG  ER K
Sbjct: 69  LLEEMYIGDLKPGTEERLK 87


>SPAC1F12.10c |||NADPH-hemoprotein reductase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 147

 Score = 52.4 bits (120), Expect = 5e-08
 Identities = 26/73 (35%), Positives = 39/73 (53%)
 Frame = +1

Query: 160 LTLDEVKKHKDEKSVWIIIHNDVYDVTKFLEEHPGGADSLLEVAGKDGTQAFEDVGHSDD 339
           +T +E+ KHK ++  WI I   VY+V+ +L  HP G   +L+ AG+D T  F       +
Sbjct: 74  VTKEELAKHKTKEDCWIAIRGKVYNVSAYLPYHPAGQKRILDYAGRDATVIFMKFHAWVN 133

Query: 340 ARELLKKYKIGTL 378
              LLK   +G L
Sbjct: 134 EEALLKTSFVGFL 146


>SPCC330.03c |||NADPH-hemoprotein reductase|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 145

 Score = 46.8 bits (106), Expect = 3e-06
 Identities = 26/76 (34%), Positives = 41/76 (53%), Gaps = 2/76 (2%)
 Frame = +1

Query: 157 NLTLDEVKKHKDEKSVWIIIHNDVYDVTKFLEEHPGGADSLLEVAGKDGTQAFEDVGHSD 336
           ++T +E+ KH      W+ I   VY+VT +L  HP G   +L+ +G D T+ +  + H D
Sbjct: 71  SVTAEELAKHCSPDDCWMAIRGKVYNVTAYLPYHPVGPKKILKHSGVDATKPY--LKHHD 128

Query: 337 --DARELLKKYKIGTL 378
             +  ELLK   +G L
Sbjct: 129 WVNEEELLKTSFVGYL 144


>SPCC1281.06c |||acyl-coA desaturase |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 479

 Score = 42.3 bits (95), Expect = 6e-05
 Identities = 23/67 (34%), Positives = 35/67 (52%), Gaps = 2/67 (2%)
 Frame = +1

Query: 208 IIIHNDVYDVTKFLEEHPGGADSLLEVAGKDGTQAFED--VGHSDDARELLKKYKIGTLP 381
           ++I+  V+D+T F  EHPGG   L    GKD T AF      H++ A  LL  Y++  + 
Sbjct: 376 VLINGVVHDMTGF--EHPGGQGLLRSAFGKDATAAFNGGVYDHTNGAHNLLSTYRVAVVR 433

Query: 382 PGERCKI 402
            G   ++
Sbjct: 434 GGMEVEV 440


>SPCC622.15c |||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 557

 Score = 33.5 bits (73), Expect = 0.027
 Identities = 28/92 (30%), Positives = 44/92 (47%)
 Frame = -1

Query: 512 VFRLQFS*LRYFLRTIPMSKAPASATTAHFNFEQSVMILHLSPGGNVPILYFFNNSRASS 333
           ++ L FS L      IP S  P  ++  H  F  + +  H +P G VP  +   N +   
Sbjct: 299 MYPLPFSPLPSAAPPIPFS--PNVSSHPHMAFLPATVPTHSAPPGFVPYDFPITNDK--- 353

Query: 332 LCPTSSKAWVPSFPATSNNESAPPGCSSKNLV 237
           + P+ S  +   FP+TS + SA PG S+  +V
Sbjct: 354 MYPSPS--FQEEFPSTSKSPSATPGSSNAPVV 383


>SPCC737.09c |hmt1|SPCC74.08c|ATP-binding cassette-type vacuolar
           membrane transporter Hmt1|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 830

 Score = 27.1 bits (57), Expect = 2.3
 Identities = 18/50 (36%), Positives = 25/50 (50%)
 Frame = -3

Query: 249 QKLSHVVNIIMNDYPHALFVFMFLDLVKC*IFTHFSLKIFKFLKEVLVGF 100
           ++  H V+I +      LF   FL++V+  IFT FSL I   L    V F
Sbjct: 468 ERYGHAVDIYLKQERKVLFSLNFLNIVQGGIFT-FSLAIACLLSAYRVTF 516


>SPCC1827.07c ||SPCP1E11.01c|SPX/EXS domain
           protein|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 682

 Score = 26.6 bits (56), Expect = 3.1
 Identities = 16/62 (25%), Positives = 26/62 (41%)
 Frame = +1

Query: 241 KFLEEHPGGADSLLEVAGKDGTQAFEDVGHSDDARELLKKYKIGTLPPGERCKIITDCSK 420
           +FL++     +   E    D  +  + +    D  E L+ +K GTL  G    I    SK
Sbjct: 70  EFLDQQANKVEEFFENLVSDARERMDLISDQVDIYEKLRAFKKGTLESGSVVLIQKQHSK 129

Query: 421 LK 426
           L+
Sbjct: 130 LR 131


>SPBC16C6.02c |vps1302|vps13b|chorein homolog|Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 3131

 Score = 26.6 bits (56), Expect = 3.1
 Identities = 14/43 (32%), Positives = 21/43 (48%), Gaps = 2/43 (4%)
 Frame = -1

Query: 410  SVMILHLSPGGNVPILYFFNNSRASSL--CPTSSKAWVPSFPA 288
            S  +LHL     +P++YF N    + L   P+S+  W   F A
Sbjct: 2219 SSKVLHLPSNELIPMMYFSNPQEIALLLSLPSSNNHWTSPFLA 2261


>SPAC27F1.07 |||dolichyl-diphospho-oligosaccharide-protein
           glycosyltransferase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 450

 Score = 26.2 bits (55), Expect = 4.1
 Identities = 14/43 (32%), Positives = 25/43 (58%)
 Frame = +1

Query: 175 VKKHKDEKSVWIIIHNDVYDVTKFLEEHPGGADSLLEVAGKDG 303
           +K+ + + +  I ++N+VYD+       PG + +LL  AG DG
Sbjct: 76  IKEEEKKGTNPIKVNNNVYDIPLQPPVKPGESRTLLIQAGLDG 118


>SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 534

 Score = 25.4 bits (53), Expect = 7.1
 Identities = 16/56 (28%), Positives = 27/56 (48%)
 Frame = -1

Query: 398 LHLSPGGNVPILYFFNNSRASSLCPTSSKAWVPSFPATSNNESAPPGCSSKNLVTS 231
           L  S   + P +   ++S  SS  PTS+ +   S  +  ++ S+P   SS  L +S
Sbjct: 178 LSSSTSSSQPSVSSTSSSTFSSAAPTSTSSSYLSSSSVVSSSSSPSSSSSSTLTSS 233


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,473,971
Number of Sequences: 5004
Number of extensions: 49733
Number of successful extensions: 153
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 145
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 152
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 291768710
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)