Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brS-0854
(647 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_07_0340 + 42851330-42851413,42852179-42852245,42852336-42852592 89 2e-18
08_02_0958 - 23044708-23046045,23046131-23046363,23047059-230471... 88 5e-18
08_02_0956 + 23026108-23027146,23027255-23027395,23029334-230295... 88 5e-18
05_01_0065 + 461182-461271,462222-462288,462408-462664 88 6e-18
02_05_0889 - 32532495-32533832,32533919-32534151,32534321-325344... 85 6e-17
12_01_0743 + 6676906-6677007,6677160-6677226,6678246-6678529 84 1e-16
02_05_0137 - 26181793-26182055,26182172-26182238,26182392-26182478 84 1e-16
09_02_0530 + 10285844-10287217 63 2e-10
07_01_0887 + 7380332-7380370,7381286-7381640,7382752-7382886,738... 60 2e-09
09_02_0511 - 10079180-10079355,10079656-10079722,10080144-100801... 34 0.085
01_06_0295 + 28276505-28276576,28276682-28276888,28277492-282777... 30 1.8
01_07_0009 - 40397276-40397534,40397637-40398745,40398834-403989... 29 4.2
06_01_0090 - 724296-724532,724756-724938,725038-725088,725520-72... 28 5.6
05_05_0252 - 23621592-23621912,23621958-23622317,23622979-236230... 28 5.6
03_06_0579 + 34870958-34874578 28 5.6
03_06_0646 + 35260497-35262371,35262500-35262683,35262906-352630... 27 9.7
01_06_1812 - 40057904-40057972,40058071-40058220,40059449-40059532 27 9.7
01_06_1811 - 40055106-40055174,40055291-40055440,40056696-40056782 27 9.7
01_01_0562 + 4126368-4128196,4128517-4128715,4128827-4128886,412... 27 9.7
>01_07_0340 + 42851330-42851413,42852179-42852245,42852336-42852592
Length = 135
Score = 89.4 bits (212), Expect = 2e-18
Identities = 40/76 (52%), Positives = 51/76 (67%)
Frame = +1
Query: 151 SKNLTLDEVKKHKDEKSVWIIIHNDVYDVTKFLEEHPGGADSLLEVAGKDGTQAFEDVGH 330
+K LTL+EV KH + W+II VY+VTKFLE+HPGG D LL KD T FEDVGH
Sbjct: 4 NKVLTLEEVSKHNTKDDCWLIIGGKVYNVTKFLEDHPGGDDVLLSSTAKDATDDFEDVGH 63
Query: 331 SDDARELLKKYKIGTL 378
S AR ++ +Y +G +
Sbjct: 64 STTARAMMDEYYVGDI 79
>08_02_0958 -
23044708-23046045,23046131-23046363,23047059-23047199,
23047296-23048334
Length = 916
Score = 88.2 bits (209), Expect = 5e-18
Identities = 39/75 (52%), Positives = 52/75 (69%)
Frame = +1
Query: 154 KNLTLDEVKKHKDEKSVWIIIHNDVYDVTKFLEEHPGGADSLLEVAGKDGTQAFEDVGHS 333
K T+ EV+KH + S WI++H VYD T FL++HPGGADS+L AG D T+ F+ + HS
Sbjct: 542 KQFTMSEVRKHSSQDSAWIVVHGHVYDCTAFLKDHPGGADSILINAGTDCTEEFDAI-HS 600
Query: 334 DDARELLKKYKIGTL 378
D A+ LL Y+IG L
Sbjct: 601 DKAKALLDTYRIGEL 615
>08_02_0956 +
23026108-23027146,23027255-23027395,23029334-23029566,
23029652-23030989
Length = 916
Score = 88.2 bits (209), Expect = 5e-18
Identities = 39/75 (52%), Positives = 52/75 (69%)
Frame = +1
Query: 154 KNLTLDEVKKHKDEKSVWIIIHNDVYDVTKFLEEHPGGADSLLEVAGKDGTQAFEDVGHS 333
K T+ EV+KH + S WI++H VYD T FL++HPGGADS+L AG D T+ F+ + HS
Sbjct: 542 KQFTMSEVRKHSSQDSAWIVVHGHVYDCTAFLKDHPGGADSILINAGTDCTEEFDAI-HS 600
Query: 334 DDARELLKKYKIGTL 378
D A+ LL Y+IG L
Sbjct: 601 DKAKALLDTYRIGEL 615
>05_01_0065 + 461182-461271,462222-462288,462408-462664
Length = 137
Score = 87.8 bits (208), Expect = 6e-18
Identities = 39/75 (52%), Positives = 50/75 (66%)
Frame = +1
Query: 154 KNLTLDEVKKHKDEKSVWIIIHNDVYDVTKFLEEHPGGADSLLEVAGKDGTQAFEDVGHS 333
K TL+EV KH + W+II VY+V+KFLE+HPGG D LL GKD T FEDVGHS
Sbjct: 7 KVYTLEEVAKHNSKDDCWLIIGGKVYNVSKFLEDHPGGDDVLLSSTGKDATDDFEDVGHS 66
Query: 334 DDARELLKKYKIGTL 378
AR ++ +Y +G +
Sbjct: 67 TTARAMMDEYYVGDI 81
>02_05_0889 -
32532495-32533832,32533919-32534151,32534321-32534461,
32534564-32535521
Length = 889
Score = 84.6 bits (200), Expect = 6e-17
Identities = 38/72 (52%), Positives = 52/72 (72%)
Frame = +1
Query: 163 TLDEVKKHKDEKSVWIIIHNDVYDVTKFLEEHPGGADSLLEVAGKDGTQAFEDVGHSDDA 342
T+ EV++H +S WII+H VYD T FL++HPGGADS++ AG D T+ F+ + HSD A
Sbjct: 517 TMSEVRRHTTPESAWIIVHGHVYDCTGFLKDHPGGADSIMINAGTDCTEEFDAI-HSDKA 575
Query: 343 RELLKKYKIGTL 378
R LL+ Y+IG L
Sbjct: 576 RGLLEMYRIGEL 587
>12_01_0743 + 6676906-6677007,6677160-6677226,6678246-6678529
Length = 150
Score = 83.8 bits (198), Expect = 1e-16
Identities = 38/76 (50%), Positives = 48/76 (63%), Gaps = 1/76 (1%)
Frame = +1
Query: 154 KNLTLDEVKKHKDEKSVWIIIHNDVYDVTKFLEEHPGGADSLLEV-AGKDGTQAFEDVGH 330
K + +V H K W++IH VYDVTKFLE+HPGG D LL A D T+AFEDVGH
Sbjct: 11 KLFSASDVVGHASRKDCWVVIHGKVYDVTKFLEDHPGGEDVLLHASASGDATEAFEDVGH 70
Query: 331 SDDARELLKKYKIGTL 378
S A ++ Y IG++
Sbjct: 71 STSAISMMNNYLIGSI 86
>02_05_0137 - 26181793-26182055,26182172-26182238,26182392-26182478
Length = 138
Score = 83.8 bits (198), Expect = 1e-16
Identities = 36/70 (51%), Positives = 46/70 (65%)
Frame = +1
Query: 163 TLDEVKKHKDEKSVWIIIHNDVYDVTKFLEEHPGGADSLLEVAGKDGTQAFEDVGHSDDA 342
+ EV KH D K W+II VYDV+ F+EEHPGG + LL GKD T F D+GH+ A
Sbjct: 9 SFQEVSKHNDRKDCWLIIAGKVYDVSPFMEEHPGGDEVLLACTGKDATADFNDIGHTATA 68
Query: 343 RELLKKYKIG 372
+EL+ +Y IG
Sbjct: 69 KELMPQYCIG 78
>09_02_0530 + 10285844-10287217
Length = 457
Score = 62.9 bits (146), Expect = 2e-10
Identities = 30/73 (41%), Positives = 43/73 (58%)
Frame = +1
Query: 160 LTLDEVKKHKDEKSVWIIIHNDVYDVTKFLEEHPGGADSLLEVAGKDGTQAFEDVGHSDD 339
++ +E++ H +WI I DVYDVT ++ HPGG LL +AG+D T AF H
Sbjct: 19 ISSEELRAHASRDDLWISISGDVYDVTAWVPHHPGGDIPLLTLAGQDATDAFA-AYHPPS 77
Query: 340 ARELLKKYKIGTL 378
AR LL ++ +G L
Sbjct: 78 ARPLLGRFLVGRL 90
>07_01_0887 +
7380332-7380370,7381286-7381640,7382752-7382886,
7383029-7383138
Length = 212
Score = 59.7 bits (138), Expect = 2e-09
Identities = 22/52 (42%), Positives = 36/52 (69%)
Frame = +1
Query: 160 LTLDEVKKHKDEKSVWIIIHNDVYDVTKFLEEHPGGADSLLEVAGKDGTQAF 315
++L+EVK+HK S+W ++ VY++ +++ HPGG D L++ AGKD T F
Sbjct: 142 ISLEEVKQHKTGDSIWTVLKGRVYNIAPYMKFHPGGVDMLMKAAGKDSTALF 193
>09_02_0511 -
10079180-10079355,10079656-10079722,10080144-10080181,
10080255-10080336
Length = 120
Score = 34.3 bits (75), Expect = 0.085
Identities = 15/23 (65%), Positives = 18/23 (78%)
Frame = +1
Query: 226 VYDVTKFLEEHPGGADSLLEVAG 294
VYDVT ++EEHPGG D +L AG
Sbjct: 41 VYDVTSYVEEHPGG-DEILNNAG 62
>01_06_0295 +
28276505-28276576,28276682-28276888,28277492-28277740,
28277928-28278080,28278158-28278313,28278411-28278570,
28278664-28278815,28278906-28278993,28279111-28279223,
28279271-28279345,28279435-28279669,28279760-28280148
Length = 682
Score = 29.9 bits (64), Expect = 1.8
Identities = 19/53 (35%), Positives = 23/53 (43%), Gaps = 1/53 (1%)
Frame = +1
Query: 238 TKFLEEHP-GGADSLLEVAGKDGTQAFEDVGHSDDARELLKKYKIGTLPPGER 393
TK H GGA+ L + G D+ HS R K +IGTL P R
Sbjct: 504 TKKAPRHSMGGANRRLSLGGATMQPPKTDILHSKSVRAAKKTEEIGTLSPSSR 556
>01_07_0009 -
40397276-40397534,40397637-40398745,40398834-40398932,
40399043-40399272,40399534-40399585,40399679-40399865,
40399987-40400193,40400283-40400449,40400804-40401094,
40401166-40401636
Length = 1023
Score = 28.7 bits (61), Expect = 4.2
Identities = 12/34 (35%), Positives = 16/34 (47%)
Frame = -3
Query: 492 LVEIFLEDDPYEQGSSQRHHCPFQFRTICDDFAS 391
L+ L+ E G + PF RT+CDD S
Sbjct: 490 LINEVLDQAKIESGKLELETVPFDLRTVCDDILS 523
>06_01_0090 -
724296-724532,724756-724938,725038-725088,725520-725639,
725738-725840,726106-726264,726728-726846,726891-727004,
727119-727277,727404-727451,728464-728640,729064-729116,
729549-729661,729793-729873,729966-730081,730786-730905,
732321-732429,732593-732770,732852-732920,733102-733233,
733657-733766,733843-734003,734081-734171,734258-734355,
734499-734619,734732-734892,734985-735090,735142-735236,
735828-735852,736008-736084,736196-736282,736372-736421,
736558-736639,736735-736795,737064-737116,737206-737395,
737472-737595,737860-737962,738064-738156,740344-740422,
740508-740584,740915-741043,742614-742731,742816-742913,
743457-743546,744998-745123,745238-745351,745488-745611,
745865-746019,746104-746201,746357-746600
Length = 1926
Score = 28.3 bits (60), Expect = 5.6
Identities = 19/62 (30%), Positives = 30/62 (48%)
Frame = +3
Query: 360 IQNWNVASR*KMQNHHRLFEIEMGSGGAGWSLAHRDRPQEISQLTKL*AEHILRESDDLK 539
+ NW R +++ HR S AG LA P + + T + EHIL+ +DD++
Sbjct: 17 MDNWERLVRAALKHQHRA-PSATASSAAGIGLASAV-PPSLGKTTNI--EHILQAADDIE 72
Query: 540 SD 545
D
Sbjct: 73 DD 74
>05_05_0252 -
23621592-23621912,23621958-23622317,23622979-23623059,
23623262-23623633
Length = 377
Score = 28.3 bits (60), Expect = 5.6
Identities = 13/34 (38%), Positives = 16/34 (47%)
Frame = +1
Query: 283 EVAGKDGTQAFEDVGHSDDARELLKKYKIGTLPP 384
EVAG QA H E +KK +G+ PP
Sbjct: 165 EVAGAPVQQAASPTSHPPQVDETMKKASVGSTPP 198
>03_06_0579 + 34870958-34874578
Length = 1206
Score = 28.3 bits (60), Expect = 5.6
Identities = 19/46 (41%), Positives = 22/46 (47%), Gaps = 7/46 (15%)
Frame = +1
Query: 232 DVTKFLEEHPG------GADSLLEV-AGKDGTQAFEDVGHSDDARE 348
D T F++ G GA LLEV A D D GH+DDA E
Sbjct: 328 DATNFVDSSTGYVATGDGASELLEVPANVDDLHFVTDDGHNDDAEE 373
>03_06_0646 +
35260497-35262371,35262500-35262683,35262906-35263007,
35263101-35263231,35263315-35263584,35263765-35263943,
35264229-35264275,35264452-35264541,35264596-35264645,
35264673-35264725,35264886-35265009,35265094-35265369,
35265460-35265593,35265672-35265758,35265864-35265977,
35266180-35266309
Length = 1281
Score = 27.5 bits (58), Expect = 9.7
Identities = 14/44 (31%), Positives = 23/44 (52%)
Frame = +1
Query: 166 LDEVKKHKDEKSVWIIIHNDVYDVTKFLEEHPGGADSLLEVAGK 297
+DE KD WI I+N+V+ HP +DS+ ++ G+
Sbjct: 568 MDETGVKKDAGCSWIEINNEVHTFASRDMSHP-NSDSIYQMLGE 610
>01_06_1812 - 40057904-40057972,40058071-40058220,40059449-40059532
Length = 100
Score = 27.5 bits (58), Expect = 9.7
Identities = 12/34 (35%), Positives = 19/34 (55%)
Frame = +1
Query: 262 GGADSLLEVAGKDGTQAFEDVGHSDDARELLKKY 363
GGA L+V G+DG + F + S ++L+ Y
Sbjct: 17 GGAHINLKVKGQDGNEVFFRIKRSTQLKKLMNAY 50
>01_06_1811 - 40055106-40055174,40055291-40055440,40056696-40056782
Length = 101
Score = 27.5 bits (58), Expect = 9.7
Identities = 12/34 (35%), Positives = 19/34 (55%)
Frame = +1
Query: 262 GGADSLLEVAGKDGTQAFEDVGHSDDARELLKKY 363
GGA L+V G+DG + F + S ++L+ Y
Sbjct: 18 GGAHINLKVKGQDGNEVFFRIKRSTQLKKLMNAY 51
>01_01_0562 + 4126368-4128196,4128517-4128715,4128827-4128886,
4129129-4129233,4129987-4130127,4130223-4130285,
4130925-4131152,4131250-4131333,4132000-4132157,
4132252-4132777,4133641-4133700,4133904-4134026,
4134906-4135181,4135282-4135347,4135500-4135631,
4135977-4136798,4137026-4137306,4137564-4137796,
4138022-4138260,4138367-4138558,4138808-4139080,
4139186-4139332
Length = 2078
Score = 27.5 bits (58), Expect = 9.7
Identities = 13/38 (34%), Positives = 20/38 (52%)
Frame = -1
Query: 458 SKAPASATTAHFNFEQSVMILHLSPGGNVPILYFFNNS 345
S P S NFE ++ H++ G+VP+ Y +NS
Sbjct: 1489 SVTPTSRFVFDANFEPTIQSGHVNIQGSVPVTYVDSNS 1526
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,594,128
Number of Sequences: 37544
Number of extensions: 320201
Number of successful extensions: 923
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 893
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 919
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1608522592
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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