Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0854
         (647 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_3835| Best HMM Match : Cyt-b5 (HMM E-Value=4.8e-23)                103   9e-23
SB_34578| Best HMM Match : Cyt-b5 (HMM E-Value=4.8e-23)               103   9e-23
SB_6739| Best HMM Match : RCC1 (HMM E-Value=1.6e-34)                   64   7e-11
SB_23882| Best HMM Match : Cyt-b5 (HMM E-Value=9.2e-19)                62   5e-10
SB_58806| Best HMM Match : Cyt-b5 (HMM E-Value=2.2e-20)                61   7e-10
SB_49983| Best HMM Match : Cyt-b5 (HMM E-Value=8.4e-12)                58   8e-09
SB_47216| Best HMM Match : Oxidored_molyb (HMM E-Value=0)              55   4e-08
SB_31956| Best HMM Match : No HMM Matches (HMM E-Value=.)              51   7e-07
SB_34637| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   1.1  
SB_49753| Best HMM Match : F5_F8_type_C (HMM E-Value=3.4e-30)          29   4.3  
SB_58498| Best HMM Match : Mtc (HMM E-Value=3.00004e-41)               28   5.7  
SB_40332| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.7  
SB_20978| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.7  
SB_42304| Best HMM Match : NHL (HMM E-Value=0)                         28   5.7  
SB_57351| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.5  
SB_23567| Best HMM Match : Neur_chan_LBD (HMM E-Value=0.00019)         28   7.5  
SB_14945| Best HMM Match : Herpes_US9 (HMM E-Value=1.7)                28   7.5  
SB_51365| Best HMM Match : ig (HMM E-Value=0.00037)                    27   9.9  
SB_5465| Best HMM Match : No HMM Matches (HMM E-Value=.)               27   9.9  

>SB_3835| Best HMM Match : Cyt-b5 (HMM E-Value=4.8e-23)
          Length = 109

 Score =  103 bits (248), Expect = 9e-23
 Identities = 46/80 (57%), Positives = 57/80 (71%)
 Frame = +1

Query: 154 KNLTLDEVKKHKDEKSVWIIIHNDVYDVTKFLEEHPGGADSLLEVAGKDGTQAFEDVGHS 333
           K  T DEVK H      W++IHN V+DVTKFL+EHPGG + LLE AG D +++FEDVGHS
Sbjct: 8   KLYTFDEVKNHNKAGGCWLVIHNKVFDVTKFLDEHPGGEEVLLEQAGGDASESFEDVGHS 67

Query: 334 DDARELLKKYKIGTLPPGER 393
            DAREL+ +Y IG L   +R
Sbjct: 68  SDARELMNEYCIGELREADR 87


>SB_34578| Best HMM Match : Cyt-b5 (HMM E-Value=4.8e-23)
          Length = 172

 Score =  103 bits (248), Expect = 9e-23
 Identities = 46/80 (57%), Positives = 57/80 (71%)
 Frame = +1

Query: 154 KNLTLDEVKKHKDEKSVWIIIHNDVYDVTKFLEEHPGGADSLLEVAGKDGTQAFEDVGHS 333
           K  T DEVK H      W++IHN V+DVTKFL+EHPGG + LLE AG D +++FEDVGHS
Sbjct: 8   KLYTFDEVKNHNKAGGCWLVIHNKVFDVTKFLDEHPGGEEVLLEQAGGDASESFEDVGHS 67

Query: 334 DDARELLKKYKIGTLPPGER 393
            DAREL+ +Y IG L   +R
Sbjct: 68  SDARELMNEYCIGELREADR 87


>SB_6739| Best HMM Match : RCC1 (HMM E-Value=1.6e-34)
          Length = 1790

 Score = 64.5 bits (150), Expect = 7e-11
 Identities = 26/69 (37%), Positives = 44/69 (63%)
 Frame = +1

Query: 169  DEVKKHKDEKSVWIIIHNDVYDVTKFLEEHPGGADSLLEVAGKDGTQAFEDVGHSDDARE 348
            ++++ H  E  +W++IH  VYD+ +F EE P G   L + A  D T+AFE+  HS +AR 
Sbjct: 1234 EDLENHNKEGGMWVVIHGKVYDLKEFKEEAPCGESLLQKYAACDATKAFEEANHSYEARM 1293

Query: 349  LLKKYKIGT 375
            +++ + +GT
Sbjct: 1294 MMQDHLVGT 1302


>SB_23882| Best HMM Match : Cyt-b5 (HMM E-Value=9.2e-19)
          Length = 167

 Score = 61.7 bits (143), Expect = 5e-10
 Identities = 33/79 (41%), Positives = 43/79 (54%), Gaps = 3/79 (3%)
 Frame = +1

Query: 169 DEVKKHKDEKSVWIIIHNDVYDVTKFLEEHPGGADSLLEVAGKDGTQAF---EDVGHSDD 339
           +E+ +HK +  +W+I    VYD++KF E HPGG D LL  +G+D T      E   HS  
Sbjct: 13  EEIGRHKSDGDLWVIHSGKVYDISKFSERHPGGKDVLLLNSGQDVTSIMSNGEIHKHSQI 72

Query: 340 ARELLKKYKIGTLPPGERC 396
           A   LKKY IG L     C
Sbjct: 73  AYGWLKKYNIGRLQAELSC 91


>SB_58806| Best HMM Match : Cyt-b5 (HMM E-Value=2.2e-20)
          Length = 142

 Score = 61.3 bits (142), Expect = 7e-10
 Identities = 31/93 (33%), Positives = 52/93 (55%)
 Frame = +1

Query: 142 RKMSKNLTLDEVKKHKDEKSVWIIIHNDVYDVTKFLEEHPGGADSLLEVAGKDGTQAFED 321
           R+  K  TLDEVK+H  +   W+++ + VYD++K++  HPGG   +L +AG++ T  F+ 
Sbjct: 7   RRTPKVYTLDEVKEHCSKGDCWVVVEDSVYDLSKWIGHHPGGELPILYMAGRECTDVFKA 66

Query: 322 VGHSDDARELLKKYKIGTLPPGERCKIITDCSK 420
              +    + L  +KIG L    + K  T  S+
Sbjct: 67  FHPAWVFTKKLPAFKIGKLDDTRKEKKETSLSE 99


>SB_49983| Best HMM Match : Cyt-b5 (HMM E-Value=8.4e-12)
          Length = 303

 Score = 57.6 bits (133), Expect = 8e-09
 Identities = 29/79 (36%), Positives = 44/79 (55%), Gaps = 3/79 (3%)
 Frame = +1

Query: 151 SKNLTLDEVKKHKDEK-SVWIIIHNDVYDVTKFLEEHPGGADSLLEVAGK--DGTQAFED 321
           S+  +L EV KH D +  VW    + VYD+T F+E+HPGG   ++  AG   D      D
Sbjct: 155 SRTFSLSEVAKHTDARHGVWTTYEDGVYDLTDFIEQHPGGKKMIMLAAGSRLDPYWNIHD 214

Query: 322 VGHSDDARELLKKYKIGTL 378
               DD  ++L +++IG+L
Sbjct: 215 FHKRDDIVKILSEFRIGSL 233


>SB_47216| Best HMM Match : Oxidored_molyb (HMM E-Value=0)
          Length = 672

 Score = 55.2 bits (127), Expect = 4e-08
 Identities = 27/79 (34%), Positives = 45/79 (56%), Gaps = 3/79 (3%)
 Frame = +1

Query: 151 SKNLTLDEVKKHKDEKS-VWIIIHNDVYDVTKFLEEHPGGADSLLEVAGK--DGTQAFED 321
           +K  + +EV KH + KS +W+     VYD+T F++ HPGG   ++  AG   +   A   
Sbjct: 201 AKIYSKEEVSKHNNRKSRIWVTYKGGVYDITDFIDGHPGGTSKIILAAGAALEPYWAMYA 260

Query: 322 VGHSDDARELLKKYKIGTL 378
           V   ++  E+L++Y+IG L
Sbjct: 261 VHKKEEVLEILEEYRIGDL 279


>SB_31956| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 319

 Score = 51.2 bits (117), Expect = 7e-07
 Identities = 24/56 (42%), Positives = 33/56 (58%)
 Frame = +1

Query: 151 SKNLTLDEVKKHKDEKSVWIIIHNDVYDVTKFLEEHPGGADSLLEVAGKDGTQAFE 318
           +K  T  ++ +   E++  + IH  VYDVT FL  HPGG + LL  AG+D T  FE
Sbjct: 22  TKTFTWQQLSRLNTEQNAHLAIHGKVYDVTNFLLRHPGGKELLLIGAGRDVTLVFE 77


>SB_34637| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 202

 Score = 30.7 bits (66), Expect = 1.1
 Identities = 12/32 (37%), Positives = 21/32 (65%)
 Frame = +1

Query: 298 DGTQAFEDVGHSDDARELLKKYKIGTLPPGER 393
           D T+AFE+  HS +AR +++ + +GT    E+
Sbjct: 3   DATKAFEEANHSYEARMMMQDHLVGTFVEPEQ 34


>SB_49753| Best HMM Match : F5_F8_type_C (HMM E-Value=3.4e-30)
          Length = 321

 Score = 28.7 bits (61), Expect = 4.3
 Identities = 22/78 (28%), Positives = 40/78 (51%), Gaps = 7/78 (8%)
 Frame = -3

Query: 603 SHSNISKRSNIIPYSLTFD--NPILNHR-IRVKCV----PLTV*LVEIFLEDDPYEQGSS 445
           S+     R  ++PY +     NP ++ R IR+  +    PLT+  VE++ ++   +QGS 
Sbjct: 213 SNPKCGDRHAVLPYDMISIECNPRMSGRYIRIVLITAFDPLTLCEVEVYTDNSNRQQGS- 271

Query: 444 QRHHCPFQFRTICDDFAS 391
            +HH       +CD ++S
Sbjct: 272 -KHHYKEPPDNVCDVYSS 288


>SB_58498| Best HMM Match : Mtc (HMM E-Value=3.00004e-41)
          Length = 217

 Score = 28.3 bits (60), Expect = 5.7
 Identities = 12/30 (40%), Positives = 19/30 (63%)
 Frame = +1

Query: 298 DGTQAFEDVGHSDDARELLKKYKIGTLPPG 387
           D T++F      DDA++L++KY+ G  P G
Sbjct: 29  DWTKSFHTNKELDDAKDLVEKYRRGEEPAG 58


>SB_40332| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 477

 Score = 28.3 bits (60), Expect = 5.7
 Identities = 12/30 (40%), Positives = 19/30 (63%)
 Frame = +1

Query: 298 DGTQAFEDVGHSDDARELLKKYKIGTLPPG 387
           D T++F      DDA++L++KY+ G  P G
Sbjct: 289 DWTKSFHTNKELDDAKDLVEKYRRGEEPAG 318


>SB_20978| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1683

 Score = 28.3 bits (60), Expect = 5.7
 Identities = 20/61 (32%), Positives = 26/61 (42%), Gaps = 1/61 (1%)
 Frame = +2

Query: 248 WRSIQV-ELIHC*KWQGRMEPRLLKTWDIVMMLESC*RNTKLERCLQVKDAKSSQIVRN* 424
           WR   V  L+   KW G  EP LLK   +  M E+    + +E C   +    S   RN 
Sbjct: 90  WRREYVPHLVQRSKWLGPSEPDLLKNIGVARMPET---RSNVENCRAKRKVVRSNCTRNI 146

Query: 425 N 427
           N
Sbjct: 147 N 147


>SB_42304| Best HMM Match : NHL (HMM E-Value=0)
          Length = 1279

 Score = 28.3 bits (60), Expect = 5.7
 Identities = 18/56 (32%), Positives = 24/56 (42%), Gaps = 5/56 (8%)
 Frame = -1

Query: 398 LHLSPGGNVPILYFFNNSRAS-----SLCPTSSKAWVPSFPATSNNESAPPGCSSK 246
           L L+P GN+ I  F NN   S     S+ P + +  +   PA  N    P G   K
Sbjct: 345 LALTPDGNICIADFRNNRYRSNETKLSIVPRAGRKLLQKLPANRNKSYPPTGLKCK 400


>SB_57351| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 559

 Score = 27.9 bits (59), Expect = 7.5
 Identities = 15/36 (41%), Positives = 22/36 (61%), Gaps = 5/36 (13%)
 Frame = +3

Query: 423 EMGSGGAG-----WSLAHRDRPQEISQLTKL*AEHI 515
           +MG GG G     W + HRD P E++ L+K+ A +I
Sbjct: 461 QMGGGGGGASYCPWGIPHRDPPLEVT-LSKIEAIYI 495


>SB_23567| Best HMM Match : Neur_chan_LBD (HMM E-Value=0.00019)
          Length = 653

 Score = 27.9 bits (59), Expect = 7.5
 Identities = 13/37 (35%), Positives = 22/37 (59%)
 Frame = +3

Query: 417 EIEMGSGGAGWSLAHRDRPQEISQLTKL*AEHILRES 527
           E ++G+G +G SLA    P+++    +  AEH  RE+
Sbjct: 576 ETDLGTGNSGPSLAVLSNPRDLDVSLEFIAEHSRREA 612


>SB_14945| Best HMM Match : Herpes_US9 (HMM E-Value=1.7)
          Length = 292

 Score = 27.9 bits (59), Expect = 7.5
 Identities = 15/36 (41%), Positives = 22/36 (61%), Gaps = 5/36 (13%)
 Frame = +3

Query: 423 EMGSGGAG-----WSLAHRDRPQEISQLTKL*AEHI 515
           +MG GG G     W + HRD P E++ L+K+ A +I
Sbjct: 117 QMGGGGGGASYCPWGIPHRDPPLEVT-LSKIEAIYI 151


>SB_51365| Best HMM Match : ig (HMM E-Value=0.00037)
          Length = 498

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 13/44 (29%), Positives = 22/44 (50%)
 Frame = -3

Query: 435 HCPFQFRTICDDFASFTWRQRSNFVFLQQLSSIITMSHVFKSLG 304
           HC    R   ++ A+ TW  + N V L     ++T + V+K +G
Sbjct: 155 HCGALPRVKQNNIAAITWHSKWNRVILFFSGHVLTWNPVYKDIG 198


>SB_5465| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 810

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 13/49 (26%), Positives = 26/49 (53%), Gaps = 1/49 (2%)
 Frame = -3

Query: 465 PYEQGSSQRHHCPFQFRTICDDFA-SFTWRQRSNFVFLQQLSSIITMSH 322
           P++ GS +RH C  Q     +D A +   +Q+++ + L    +  ++SH
Sbjct: 602 PFQYGSRERHFCETQLLLTYNDLALAMDKKQQTDLLLLDFSKAFDSVSH 650


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,934,679
Number of Sequences: 59808
Number of extensions: 354433
Number of successful extensions: 969
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 879
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 968
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1645141000
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)