Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0853
         (674 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_06_0035 + 25782410-25783384,25784130-25784696                       32   0.48 
01_01_1145 + 9073973-9074281,9075440-9075998,9076088-9076241,907...    29   4.5  

>01_06_0035 + 25782410-25783384,25784130-25784696
          Length = 513

 Score = 31.9 bits (69), Expect = 0.48
 Identities = 14/27 (51%), Positives = 17/27 (62%)
 Frame = +1

Query: 589 ISEALHSVCGERRPTAPRRGGLAGATV 669
           +S+ LH+  G R P A RRGG  GA V
Sbjct: 453 VSQKLHAGTGRRHPRASRRGGGGGAVV 479


>01_01_1145 +
           9073973-9074281,9075440-9075998,9076088-9076241,
           9077475-9077565,9077722-9077793,9077879-9078390,
           9078854-9078923,9079514-9079579,9080266-9080570,
           9080872-9081006,9081141-9081204,9081429-9081574,
           9081669-9081773,9082310-9082490
          Length = 922

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 11/20 (55%), Positives = 13/20 (65%)
 Frame = -3

Query: 666 GGPS*PAAPWRCWSPLPADG 607
           GGP  PA+PWR  +P P  G
Sbjct: 27  GGPGAPASPWRKTTPPPVAG 46


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,442,816
Number of Sequences: 37544
Number of extensions: 186716
Number of successful extensions: 381
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 375
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 381
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1714968940
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)