Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0853
         (674 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g35600.1 68418.m04238 histone deacetylase, putative (HDA7) si...    29   2.8  
At3g22400.1 68416.m02826 lipoxygenase, putative similar to lipox...    29   2.8  

>At5g35600.1 68418.m04238 histone deacetylase, putative (HDA7)
           similar to SP|O22446 Histone deacetylase (HD)
           {Arabidopsis thaliana}; contains Pfam profile PF00850:
           Histone deacetylase family
          Length = 409

 Score = 29.1 bits (62), Expect = 2.8
 Identities = 11/25 (44%), Positives = 19/25 (76%)
 Frame = +2

Query: 308 LLPTNQQTVRSSIALINLRDTLRAQ 382
           +LPTN+Q + + + +I +R+TL AQ
Sbjct: 348 ILPTNRQNLNTRLDIITMRETLLAQ 372


>At3g22400.1 68416.m02826 lipoxygenase, putative similar to
           lipoxygenase gi:8649004 [Prunus dulcis], gi:1495802 and
           gi:1495804 from [Solanum tuberosum]
          Length = 886

 Score = 29.1 bits (62), Expect = 2.8
 Identities = 21/59 (35%), Positives = 31/59 (52%), Gaps = 1/59 (1%)
 Frame = -1

Query: 662 APASP-PRRGAVGRRSPQTECNASEIGLLLRNPQSFIIRSELLWILSHERFARYPLYRL 489
           +P  P PRRG  GR+S +++   SE  L L N   ++ R E     SH +F+ +  Y L
Sbjct: 245 SPELPYPRRGKTGRKSTKSD-PKSESRLALLNLNIYVPRDER---FSHVKFSDFLAYAL 299


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,334,218
Number of Sequences: 28952
Number of extensions: 155171
Number of successful extensions: 252
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 250
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 252
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1432596384
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)