Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0849
         (569 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q1AKH8 Cluster: Reverse transcriptase family member; n=...    46   8e-04
UniRef50_Q6L4B3 Cluster: Polyprotein, putative; n=6; core eudico...    41   0.023
UniRef50_Q2HTD6 Cluster: RNA-binding region RNP-1 (RNA recogniti...    36   0.51 
UniRef50_UPI00006CF251 Cluster: hypothetical protein TTHERM_0005...    35   1.5  
UniRef50_Q4TE65 Cluster: Chromosome undetermined SCAF5629, whole...    34   2.0  
UniRef50_Q6FM58 Cluster: Similar to tr|Q99296 Saccharomyces cere...    33   4.7  
UniRef50_A7I9S6 Cluster: Putative uncharacterized protein precur...    33   4.7  
UniRef50_UPI0000E490F6 Cluster: PREDICTED: similar to endonuclea...    33   6.2  
UniRef50_UPI0000E4958A Cluster: PREDICTED: similar to endonuclea...    32   8.2  
UniRef50_A7TTI3 Cluster: Putative uncharacterized protein; n=1; ...    32   8.2  

>UniRef50_Q1AKH8 Cluster: Reverse transcriptase family member; n=6;
           Papilionoideae|Rep: Reverse transcriptase family member
           - Glycine max (Soybean)
          Length = 377

 Score = 45.6 bits (103), Expect = 8e-04
 Identities = 21/35 (60%), Positives = 25/35 (71%)
 Frame = -3

Query: 135 NEIGEKTMRMLR*MCGVTRMDKIRNEYVRRSLKVA 31
           N++G   MRMLR MCG TR DKIRNE +R  + VA
Sbjct: 261 NKVGVAEMRMLRWMCGKTRQDKIRNEAIRERVGVA 295


>UniRef50_Q6L4B3 Cluster: Polyprotein, putative; n=6; core
           eudicotyledons|Rep: Polyprotein, putative - Solanum
           demissum (Wild potato)
          Length = 868

 Score = 40.7 bits (91), Expect = 0.023
 Identities = 19/28 (67%), Positives = 21/28 (75%)
 Frame = -3

Query: 114 MRMLR*MCGVTRMDKIRNEYVRRSLKVA 31
           MRMLR MCG TR DKIRNE +R  + VA
Sbjct: 584 MRMLRWMCGHTRSDKIRNEVIREKVGVA 611


>UniRef50_Q2HTD6 Cluster: RNA-binding region RNP-1 (RNA recognition
           motif); Calcium-binding EF- hand; n=1; Medicago
           truncatula|Rep: RNA-binding region RNP-1 (RNA
           recognition motif); Calcium-binding EF- hand - Medicago
           truncatula (Barrel medic)
          Length = 559

 Score = 36.3 bits (80), Expect = 0.51
 Identities = 17/35 (48%), Positives = 23/35 (65%)
 Frame = -3

Query: 135 NEIGEKTMRMLR*MCGVTRMDKIRNEYVRRSLKVA 31
           N++    MRMLR M G TR D+IRN+ +R  + VA
Sbjct: 303 NQVSVAEMRMLRWMSGKTRHDRIRNDTIRERVGVA 337


>UniRef50_UPI00006CF251 Cluster: hypothetical protein
           TTHERM_00056020; n=1; Tetrahymena thermophila SB210|Rep:
           hypothetical protein TTHERM_00056020 - Tetrahymena
           thermophila SB210
          Length = 187

 Score = 34.7 bits (76), Expect = 1.5
 Identities = 17/51 (33%), Positives = 29/51 (56%)
 Frame = +1

Query: 370 RTILIHPCTPLANRTKQDKVLECKRVFGICEFF*QKPYCYYEFEISDFFFK 522
           R ++I+ C  ++N  K  KV + K    I +FF Q  YCY++ +I D  ++
Sbjct: 60  RNLMINVCQDISNFRKYRKVNKYKYEVTIPKFFKQIKYCYHKMKIVDDIYQ 110


>UniRef50_Q4TE65 Cluster: Chromosome undetermined SCAF5629, whole
           genome shotgun sequence; n=3; Tetraodon
           nigroviridis|Rep: Chromosome undetermined SCAF5629,
           whole genome shotgun sequence - Tetraodon nigroviridis
           (Green puffer)
          Length = 73

 Score = 34.3 bits (75), Expect = 2.0
 Identities = 16/33 (48%), Positives = 22/33 (66%)
 Frame = -3

Query: 132 EIGEKTMRMLR*MCGVTRMDKIRNEYVRRSLKV 34
           E+    M+MLR   GVTRMD+I+ EY+R +  V
Sbjct: 17  ELEVAEMKMLRFSLGVTRMDEIKKEYIRGTAHV 49


>UniRef50_Q6FM58 Cluster: Similar to tr|Q99296 Saccharomyces
           cerevisiae YLR149c; n=1; Candida glabrata|Rep: Similar
           to tr|Q99296 Saccharomyces cerevisiae YLR149c - Candida
           glabrata (Yeast) (Torulopsis glabrata)
          Length = 736

 Score = 33.1 bits (72), Expect = 4.7
 Identities = 13/38 (34%), Positives = 23/38 (60%)
 Frame = +2

Query: 413 LNKTKY*NVNVYSGFVSFFNKNRIVIMSLKFPIFFSNC 526
           L+++ Y N N++ G +S +N+N  V M+     F +NC
Sbjct: 213 LDRSNYSNPNIWKGILSLYNQNTNVSMTFVLGQFINNC 250


>UniRef50_A7I9S6 Cluster: Putative uncharacterized protein
           precursor; n=1; Candidatus Methanoregula boonei 6A8|Rep:
           Putative uncharacterized protein precursor -
           Methanoregula boonei (strain 6A8)
          Length = 307

 Score = 33.1 bits (72), Expect = 4.7
 Identities = 16/48 (33%), Positives = 30/48 (62%)
 Frame = +3

Query: 270 NIFFYLIPLLAKDQISLINKDFRSTLTPSIVGFENDSNPPVYTTSQPN 413
           NI F+L+ +LA   I+L++     + TP ++  EN ++ P +TT+ P+
Sbjct: 3   NIRFFLLLVLAAAVITLVSPVQADSATPGVLYQENFASNPQWTTNNPS 50


>UniRef50_UPI0000E490F6 Cluster: PREDICTED: similar to
           endonuclease-reverse transcriptase; n=5;
           Strongylocentrotus purpuratus|Rep: PREDICTED: similar to
           endonuclease-reverse transcriptase - Strongylocentrotus
           purpuratus
          Length = 1030

 Score = 32.7 bits (71), Expect = 6.2
 Identities = 14/27 (51%), Positives = 20/27 (74%)
 Frame = -3

Query: 114 MRMLR*MCGVTRMDKIRNEYVRRSLKV 34
           M  LR + GVTR+DKIRN +++ SL +
Sbjct: 908 MACLRRIMGVTRLDKIRNTHIKESLNL 934


>UniRef50_UPI0000E4958A Cluster: PREDICTED: similar to
           endonuclease-reverse transcriptase, partial; n=7;
           Strongylocentrotus purpuratus|Rep: PREDICTED: similar to
           endonuclease-reverse transcriptase, partial -
           Strongylocentrotus purpuratus
          Length = 787

 Score = 32.3 bits (70), Expect = 8.2
 Identities = 16/34 (47%), Positives = 22/34 (64%)
 Frame = -3

Query: 135 NEIGEKTMRMLR*MCGVTRMDKIRNEYVRRSLKV 34
           N++    MR LR + GV  MDKIRNE +R+ L +
Sbjct: 401 NKLEVFEMRCLRTILGVHLMDKIRNEEIRQRLNI 434


>UniRef50_A7TTI3 Cluster: Putative uncharacterized protein; n=1;
           Vanderwaltozyma polyspora DSM 70294|Rep: Putative
           uncharacterized protein - Vanderwaltozyma polyspora DSM
           70294
          Length = 801

 Score = 32.3 bits (70), Expect = 8.2
 Identities = 23/70 (32%), Positives = 30/70 (42%), Gaps = 6/70 (8%)
 Frame = -2

Query: 403 LVVYTGGLESFSKPTIEGVSVDRKSLFINDI*SFASKGI------K*KKIFACLVGTTSS 242
           +V+Y    E F K  IE    + K +FIND  +   KGI      K K     L      
Sbjct: 478 VVMYLNQFEKFEKSIIEAYGYEIKKMFINDNENLTHKGIICKLSLKVKMFNGKLNAILRE 537

Query: 241 CYLIRG*GVE 212
           C LIR  G++
Sbjct: 538 CSLIRNEGIQ 547


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 551,207,328
Number of Sequences: 1657284
Number of extensions: 10594295
Number of successful extensions: 23465
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 22904
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 23457
length of database: 575,637,011
effective HSP length: 96
effective length of database: 416,537,747
effective search space used: 38738010471
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)