Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0849
         (569 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_01_0929 + 7818973-7820019,7820092-7820328,7820455-7820541,782...    28   4.6  
12_01_0624 - 5137096-5137310,5137923-5138380,5138428-5140070,514...    28   6.0  
05_03_0340 + 12691974-12692155,12692248-12692312,12692816-126928...    28   6.0  
08_01_0384 + 3414291-3414508,3414509-3414755,3415864-3416013,341...    27   8.0  

>07_01_0929 +
           7818973-7820019,7820092-7820328,7820455-7820541,
           7820785-7820919
          Length = 501

 Score = 28.3 bits (60), Expect = 4.6
 Identities = 18/68 (26%), Positives = 32/68 (47%), Gaps = 2/68 (2%)
 Frame = +3

Query: 192 SITPSRPSTPYPLIR*QEEVVPTRHANIFFYLIPLLAKDQISLINKDFR--STLTPSIVG 365
           +I P  P+T   L+    E++ T    +   L+P +   + +L+   FR     TP  +G
Sbjct: 104 NIAPYYPATDISLVAVGNEIINTADNALIGGLVPAMRTLRAALVAAGFRRIRVSTPHSLG 163

Query: 366 FENDSNPP 389
             + S+PP
Sbjct: 164 ILSVSSPP 171


>12_01_0624 -
           5137096-5137310,5137923-5138380,5138428-5140070,
           5140245-5140462,5140589-5140757,5141249-5141305
          Length = 919

 Score = 27.9 bits (59), Expect = 6.0
 Identities = 16/65 (24%), Positives = 29/65 (44%), Gaps = 3/65 (4%)
 Frame = -3

Query: 288 LNKKRYSHVSWGQL---PPAT*SGGRE*RGGMVLSNVLTID*SLNECLVYCLCFNEIGEK 118
           LN K  + + WG++   P     G  E     +  +   +D  L +CL+YC  F + G+ 
Sbjct: 187 LNHKEINEIEWGKVLRSPSWLVDGMPEEINHAIYLSYDDLDPHLKQCLLYCSLFPKYGKP 246

Query: 117 TMRML 103
              ++
Sbjct: 247 NKHLI 251


>05_03_0340 +
           12691974-12692155,12692248-12692312,12692816-12692861,
           12692959-12693057,12693722-12693755,12694489-12694618,
           12694795-12694855,12695495-12695591,12696843-12697022,
           12697120-12697233,12697283-12697396
          Length = 373

 Score = 27.9 bits (59), Expect = 6.0
 Identities = 13/37 (35%), Positives = 19/37 (51%), Gaps = 1/37 (2%)
 Frame = +1

Query: 391 CTPLANRTKQDKVLECKRVFGICEFF*QKPY-CYYEF 498
           C PL    K  +++   R   +C FF +KPY  + EF
Sbjct: 246 CVPLEGLVKSQELIALHRNLILCMFFPKKPYEVFLEF 282


>08_01_0384 +
           3414291-3414508,3414509-3414755,3415864-3416013,
           3416419-3416476,3416556-3416648,3416775-3416807,
           3417357-3417448,3417544-3417603,3417729-3417995
          Length = 405

 Score = 27.5 bits (58), Expect = 8.0
 Identities = 19/42 (45%), Positives = 23/42 (54%), Gaps = 3/42 (7%)
 Frame = -2

Query: 436 ILVLCLV*FGWLVVYTGG--LESFSKPTIEGVS-VDRKSLFI 320
           +LVL LV  GWL+   GG   E+ S P   GVS V  K  F+
Sbjct: 54  VLVLVLVLEGWLMCGGGGCRYEALSTPVNWGVSIVPEKKAFV 95


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,435,493
Number of Sequences: 37544
Number of extensions: 280559
Number of successful extensions: 584
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 570
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 584
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1317005676
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)