Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0849
         (569 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL117204-33|CAJ43916.1|  259|Caenorhabditis elegans Hypothetical...    28   4.1  
AL117204-18|CAD56250.1|   93|Caenorhabditis elegans Hypothetical...    28   4.1  
AL117204-17|CAD56251.1|  126|Caenorhabditis elegans Hypothetical...    28   4.1  
AL034393-17|CAA22315.1|  503|Caenorhabditis elegans Hypothetical...    27   7.2  

>AL117204-33|CAJ43916.1|  259|Caenorhabditis elegans Hypothetical
           protein Y116A8C.28c protein.
          Length = 259

 Score = 28.3 bits (60), Expect = 4.1
 Identities = 11/27 (40%), Positives = 16/27 (59%)
 Frame = -2

Query: 406 WLVVYTGGLESFSKPTIEGVSVDRKSL 326
           W  +YTG +  FSKP  + V VD  ++
Sbjct: 221 WFDIYTGEMHMFSKPNKQFVLVDESNV 247


>AL117204-18|CAD56250.1|   93|Caenorhabditis elegans Hypothetical
           protein Y116A8C.28b protein.
          Length = 93

 Score = 28.3 bits (60), Expect = 4.1
 Identities = 11/27 (40%), Positives = 16/27 (59%)
 Frame = -2

Query: 406 WLVVYTGGLESFSKPTIEGVSVDRKSL 326
           W  +YTG +  FSKP  + V VD  ++
Sbjct: 55  WFDIYTGEMHMFSKPNKQFVLVDESNV 81


>AL117204-17|CAD56251.1|  126|Caenorhabditis elegans Hypothetical
           protein Y116A8C.28a protein.
          Length = 126

 Score = 28.3 bits (60), Expect = 4.1
 Identities = 11/27 (40%), Positives = 16/27 (59%)
 Frame = -2

Query: 406 WLVVYTGGLESFSKPTIEGVSVDRKSL 326
           W  +YTG +  FSKP  + V VD  ++
Sbjct: 88  WFDIYTGEMHMFSKPNKQFVLVDESNV 114


>AL034393-17|CAA22315.1|  503|Caenorhabditis elegans Hypothetical
           protein Y18D10A.23 protein.
          Length = 503

 Score = 27.5 bits (58), Expect = 7.2
 Identities = 13/28 (46%), Positives = 19/28 (67%)
 Frame = +2

Query: 50  LTYSFRILSILVTPHIHRNIRIVFSPIS 133
           LT+  + ++IL+T HI   I IV SP+S
Sbjct: 301 LTWVAQTINILITAHILPTIIIVLSPLS 328


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,902,360
Number of Sequences: 27780
Number of extensions: 263814
Number of successful extensions: 563
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 551
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 563
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1187327456
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)