Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0849
         (569 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g73470.1 68414.m08505 expressed protein                             29   2.2  
At1g73470.2 68414.m08506 expressed protein                             28   3.8  
At5g26940.4 68418.m03215 exonuclease family protein contains exo...    27   6.7  
At5g26940.3 68418.m03214 exonuclease family protein contains exo...    27   6.7  
At5g26940.2 68418.m03213 exonuclease family protein contains exo...    27   6.7  
At5g26940.1 68418.m03212 exonuclease family protein contains exo...    27   6.7  

>At1g73470.1 68414.m08505 expressed protein
          Length = 351

 Score = 29.1 bits (62), Expect = 2.2
 Identities = 20/53 (37%), Positives = 25/53 (47%)
 Frame = -2

Query: 235 LIRG*GVEGRDGVIECLNYRLKFK*MSCLLPLL**DWRKNYANVAMNVWSNEN 77
           L+ G  +E RDG IE L  R  F        L    WR +Y NV + V +N N
Sbjct: 103 LMIGQDIEVRDGFIEALESRFLFLAADARSTLR--GWRPSYRNVLLAVRNNLN 153


>At1g73470.2 68414.m08506 expressed protein
          Length = 248

 Score = 28.3 bits (60), Expect = 3.8
 Identities = 19/50 (38%), Positives = 23/50 (46%)
 Frame = -2

Query: 226 G*GVEGRDGVIECLNYRLKFK*MSCLLPLL**DWRKNYANVAMNVWSNEN 77
           G  +E RDG IE L  R  F        L    WR +Y NV + V +N N
Sbjct: 3   GQDIEVRDGFIEALESRFLFLAADARSTLR--GWRPSYRNVLLAVRNNLN 50


>At5g26940.4 68418.m03215 exonuclease family protein contains
           exonuclease domain, Pfam:PF00929
          Length = 316

 Score = 27.5 bits (58), Expect = 6.7
 Identities = 14/32 (43%), Positives = 17/32 (53%)
 Frame = -1

Query: 473 C*KNSQIPNTRLHSSTLSCLVRLASGVHGWIR 378
           C   SQ+   R+HS   SC  R    VHGWI+
Sbjct: 2   CISISQVSRLRIHSFGSSCCER----VHGWIK 29


>At5g26940.3 68418.m03214 exonuclease family protein contains
           exonuclease domain, Pfam:PF00929
          Length = 316

 Score = 27.5 bits (58), Expect = 6.7
 Identities = 14/32 (43%), Positives = 17/32 (53%)
 Frame = -1

Query: 473 C*KNSQIPNTRLHSSTLSCLVRLASGVHGWIR 378
           C   SQ+   R+HS   SC  R    VHGWI+
Sbjct: 2   CISISQVSRLRIHSFGSSCCER----VHGWIK 29


>At5g26940.2 68418.m03213 exonuclease family protein contains
           exonuclease domain, Pfam:PF00929
          Length = 316

 Score = 27.5 bits (58), Expect = 6.7
 Identities = 14/32 (43%), Positives = 17/32 (53%)
 Frame = -1

Query: 473 C*KNSQIPNTRLHSSTLSCLVRLASGVHGWIR 378
           C   SQ+   R+HS   SC  R    VHGWI+
Sbjct: 2   CISISQVSRLRIHSFGSSCCER----VHGWIK 29


>At5g26940.1 68418.m03212 exonuclease family protein contains
           exonuclease domain, Pfam:PF00929
          Length = 316

 Score = 27.5 bits (58), Expect = 6.7
 Identities = 14/32 (43%), Positives = 17/32 (53%)
 Frame = -1

Query: 473 C*KNSQIPNTRLHSSTLSCLVRLASGVHGWIR 378
           C   SQ+   R+HS   SC  R    VHGWI+
Sbjct: 2   CISISQVSRLRIHSFGSSCCER----VHGWIK 29


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,012,172
Number of Sequences: 28952
Number of extensions: 242389
Number of successful extensions: 514
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 506
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 514
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1102220672
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)