Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0848
         (706 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC839.17c |fkh1||FKBP-type peptidyl-prolyl cis-trans isomerase...   146   2e-36
SPBC1347.02 |fkbp39||FKBP-type peptidyl-prolyl cis-trans isomera...    92   6e-20
SPAC27F1.06c |||FKBP-type peptidyl-prolyl cis-trans isomerase |S...    80   3e-16
SPAC8F11.08c |||esterase/lipase|Schizosaccharomyces pombe|chr 1|...    26   6.0  
SPCC4B3.15 |mid1|dmf1|medial ring protein Mid1|Schizosaccharomyc...    25   8.0  

>SPBC839.17c |fkh1||FKBP-type peptidyl-prolyl cis-trans isomerase
           Fkh1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 112

 Score =  146 bits (355), Expect = 2e-36
 Identities = 64/97 (65%), Positives = 77/97 (79%)
 Frame = +2

Query: 83  GDESTYPKSGQTVVVHYTGTLTNGKKFDSSRDRGKPFKFRIGKSEVIRGWDEGVAKMSVG 262
           G+   +PK G  + +HYTGTLTNGKKFDSS DRG PF   IG  ++IRGWDEGV KMS+G
Sbjct: 11  GNGQDFPKPGDRITMHYTGTLTNGKKFDSSVDRGSPFVCTIGVGQLIRGWDEGVPKMSLG 70

Query: 263 ERAKLTCSPDYAYGQQGHPGVIPPNSTLIFDVELLRL 373
           E+AKLT +PDY YG +G PG+IPPNSTL+FDVELL +
Sbjct: 71  EKAKLTITPDYGYGPRGFPGLIPPNSTLLFDVELLAI 107


>SPBC1347.02 |fkbp39||FKBP-type peptidyl-prolyl cis-trans
           isomerase|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 361

 Score = 92.3 bits (219), Expect = 6e-20
 Identities = 46/89 (51%), Positives = 59/89 (66%)
 Frame = +2

Query: 107 SGQTVVVHYTGTLTNGKKFDSSRDRGKPFKFRIGKSEVIRGWDEGVAKMSVGERAKLTCS 286
           +G+ V + Y G L NGK FD +  +GKPF F +G+ EVIRGWD GVA M  G   K+T  
Sbjct: 274 NGKKVEMRYIGKLENGKVFDKNT-KGKPFAFILGRGEVIRGWDVGVAGMQEGGERKITIP 332

Query: 287 PDYAYGQQGHPGVIPPNSTLIFDVELLRL 373
              AYG Q  PG IP NSTL+F+V+L+R+
Sbjct: 333 APMAYGNQSIPG-IPKNSTLVFEVKLVRV 360


>SPAC27F1.06c |||FKBP-type peptidyl-prolyl cis-trans isomerase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 362

 Score = 80.2 bits (189), Expect = 3e-16
 Identities = 45/97 (46%), Positives = 56/97 (57%)
 Frame = +2

Query: 77  VQGDESTYPKSGQTVVVHYTGTLTNGKKFDSSRDRGKPFKFRIGKSEVIRGWDEGVAKMS 256
           V+GD     K  + V + Y G LTNGK FD +   GKPF F +G  EVI+GWD G+  M 
Sbjct: 266 VKGDGPA-AKRKKRVSMRYIGRLTNGKVFDKNIT-GKPFTFNLGLEEVIKGWDVGIVGMQ 323

Query: 257 VGERAKLTCSPDYAYGQQGHPGVIPPNSTLIFDVELL 367
           VG    +      AYG +  PG IP NS L+FDV+LL
Sbjct: 324 VGGERTIHIPAAMAYGSKRLPG-IPANSDLVFDVKLL 359


>SPAC8F11.08c |||esterase/lipase|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 376

 Score = 25.8 bits (54), Expect = 6.0
 Identities = 11/37 (29%), Positives = 22/37 (59%)
 Frame = +2

Query: 494 YTNIVYL*WKYIYIYAIRKNFIL*VNKFMVRLINEIL 604
           +  I+Y  W  +  + I   + L V KF+V+L+++I+
Sbjct: 3   FATILYSIWVVLSSFVILSAYQLEVRKFLVKLLSKIV 39


>SPCC4B3.15 |mid1|dmf1|medial ring protein Mid1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 920

 Score = 25.4 bits (53), Expect = 8.0
 Identities = 14/44 (31%), Positives = 20/44 (45%)
 Frame = -2

Query: 291 SGEQVNLARSPTDIFATPSSQPRITSDFPILNLKGLPRSRDESN 160
           +G   NLAR P+D+   P +    +S      L  LP+   E N
Sbjct: 216 AGSVPNLARIPSDVKPVPPAHLSASSTVGPRILPSLPKDTTEDN 259


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,934,601
Number of Sequences: 5004
Number of extensions: 62134
Number of successful extensions: 158
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 151
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 154
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 327172622
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)