Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0848
         (706 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_8342| Best HMM Match : FKBP_C (HMM E-Value=0)                      109   2e-24
SB_19729| Best HMM Match : No HMM Matches (HMM E-Value=.)              77   1e-14
SB_53649| Best HMM Match : FKBP_C (HMM E-Value=4.1e-05)                39   0.003
SB_21064| Best HMM Match : TPR_2 (HMM E-Value=3.5e-09)                 37   0.014
SB_54763| Best HMM Match : No HMM Matches (HMM E-Value=.)              36   0.024
SB_6446| Best HMM Match : DENN (HMM E-Value=2.2)                       33   0.17 
SB_27573| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.8  
SB_39227| Best HMM Match : DRMBL (HMM E-Value=0.76)                    29   3.7  
SB_57839| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.9  
SB_29854| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.4  
SB_31904| Best HMM Match : Extensin_2 (HMM E-Value=0.5)                28   8.5  
SB_10820| Best HMM Match : Sulfotransfer_1 (HMM E-Value=0)             28   8.5  

>SB_8342| Best HMM Match : FKBP_C (HMM E-Value=0)
          Length = 266

 Score =  109 bits (262), Expect = 2e-24
 Identities = 49/102 (48%), Positives = 67/102 (65%)
 Frame = +2

Query: 110 GQTVVVHYTGTLTNGKKFDSSRDRGKPFKFRIGKSEVIRGWDEGVAKMSVGERAKLTCSP 289
           G T+ +HYTG L NG KFDSS DRGK F F +GK  VI+GW++G+  M +GE+ KLT  P
Sbjct: 45  GDTLSMHYTGRLANGNKFDSSLDRGKTFDFTLGKGMVIQGWEQGLLDMCIGEKRKLTIPP 104

Query: 290 DYAYGQQGHPGVIPPNSTLIFDVELLRLE*IQFVTKNYYNII 415
             AYG+ G    IPP++TL  DVEL+ ++  +    N + +I
Sbjct: 105 HLAYGENGAGAAIPPHATLYMDVELVEIQGSKESDPNVFGMI 146


>SB_19729| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 299

 Score = 77.4 bits (182), Expect = 1e-14
 Identities = 43/103 (41%), Positives = 62/103 (60%), Gaps = 7/103 (6%)
 Frame = +2

Query: 77  VQGDESTYPKSGQTVVVHYTGTLTNGKKFDSSRDRGK---PFKFRIGKSEVIRGWDEGVA 247
           V  D     K G  VVVHYTG + +G  FD++RD  K   PF+F IG   VI+G+++GV 
Sbjct: 107 VPSDCENKTKVGDHVVVHYTGWMQDGSLFDTTRDHRKGYQPFEFTIGGGTVIKGFEQGVT 166

Query: 248 KMSVGERAKLTCSPDYAYGQQGH---PGVIP-PNSTLIFDVEL 364
            M VG++ K+   P  AYG++G    PG +   N+TL +++EL
Sbjct: 167 GMCVGQKRKIVIPPALAYGKKGSGDVPGNLDLTNTTLTYNLEL 209


>SB_53649| Best HMM Match : FKBP_C (HMM E-Value=4.1e-05)
          Length = 639

 Score = 39.1 bits (87), Expect = 0.003
 Identities = 21/46 (45%), Positives = 27/46 (58%), Gaps = 4/46 (8%)
 Frame = +2

Query: 104 KSGQTVVVHYTGTLTN----GKKFDSSRDRGKPFKFRIGKSEVIRG 229
           ++G  V V YTG L      GK FDS+    K FKF+ GK +VI+G
Sbjct: 120 ETGDAVEVKYTGWLLENGNFGKVFDSNAGTDKTFKFKTGKGKVIKG 165


>SB_21064| Best HMM Match : TPR_2 (HMM E-Value=3.5e-09)
          Length = 372

 Score = 37.1 bits (82), Expect = 0.014
 Identities = 21/67 (31%), Positives = 32/67 (47%), Gaps = 3/67 (4%)
 Frame = +2

Query: 113 QTVVVHYTGTL---TNGKKFDSSRDRGKPFKFRIGKSEVIRGWDEGVAKMSVGERAKLTC 283
           Q  V H+   L   +  ++ D SR  G+PF+  +GK   +  W+E +  M V E A+ TC
Sbjct: 93  QLAVFHFKTFLMEQSEKQELDCSRKIGQPFELLMGKKFKLEIWEELIKTMRVKEVARFTC 152

Query: 284 SPDYAYG 304
                 G
Sbjct: 153 DKSVVAG 159


>SB_54763| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1190

 Score = 36.3 bits (80), Expect = 0.024
 Identities = 18/44 (40%), Positives = 26/44 (59%)
 Frame = +2

Query: 80   QGDESTYPKSGQTVVVHYTGTLTNGKKFDSSRDRGKPFKFRIGK 211
            +G  +     G TVVV Y G   NG++FDS+   G PF+F +G+
Sbjct: 881  EGHGAEMANVGCTVVVRYVGKFLNGEEFDSNTG-GVPFEFVLGE 923


>SB_6446| Best HMM Match : DENN (HMM E-Value=2.2)
          Length = 492

 Score = 33.5 bits (73), Expect = 0.17
 Identities = 23/77 (29%), Positives = 37/77 (48%), Gaps = 4/77 (5%)
 Frame = +2

Query: 266 RAKLTCSPDYA----YGQQGHPGVIPPNSTLIFDVELLRLE*IQFVTKNYYNIIVMSIAL 433
           R   +CSP  A    + Q+G   ++ PNST +F + L R +  QF       +I  S+ L
Sbjct: 274 RRLFSCSPHVAAIFDFYQRGSLVILNPNSTAVFQIALYRKKIAQFAFAT-SKVIETSLHL 332

Query: 434 *NSKSQLITLFFITYSH 484
               + L+   + TY+H
Sbjct: 333 RTHPTTLMLAPYYTYAH 349


>SB_27573| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 410

 Score = 29.5 bits (63), Expect = 2.8
 Identities = 15/67 (22%), Positives = 37/67 (55%), Gaps = 3/67 (4%)
 Frame = +2

Query: 53  WVLLLKLSVQGDESTYPKSGQTVVVHYTG---TLTNGKKFDSSRDRGKPFKFRIGKSEVI 223
           W+L   L   G+ +T+ ++GQ +  ++TG    + +   F +S D+ +  + ++G + ++
Sbjct: 42  WILTSDL--HGNYTTFLRNGQLIYPNFTGHGDLVLSYYLFRNSYDKNEELRVKVGNATLL 99

Query: 224 RGWDEGV 244
             +DE +
Sbjct: 100 SVFDESI 106


>SB_39227| Best HMM Match : DRMBL (HMM E-Value=0.76)
          Length = 600

 Score = 29.1 bits (62), Expect = 3.7
 Identities = 14/45 (31%), Positives = 21/45 (46%)
 Frame = +2

Query: 224 RGWDEGVAKMSVGERAKLTCSPDYAYGQQGHPGVIPPNSTLIFDV 358
           R  D     +S GE     CSP+        PG++PP+S  + D+
Sbjct: 538 RQGDHLAGLVSAGEVRSPGCSPEDVLAVPASPGLVPPSSGALTDL 582


>SB_57839| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 144

 Score = 28.7 bits (61), Expect = 4.9
 Identities = 10/23 (43%), Positives = 14/23 (60%)
 Frame = -3

Query: 302 RKHSQESRLIWHAHLQTSLPHPH 234
           RK+SQ + +IW+ H Q    H H
Sbjct: 109 RKNSQRNNIIWYNHFQQEHKHQH 131


>SB_29854| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 3235

 Score = 28.3 bits (60), Expect = 6.4
 Identities = 14/45 (31%), Positives = 23/45 (51%), Gaps = 4/45 (8%)
 Frame = +2

Query: 158  KFDSSRDRGKPFKFRIG----KSEVIRGWDEGVAKMSVGERAKLT 280
            KFD +   G PFK R+G      E ++ +  G++    G+ A+ T
Sbjct: 3054 KFDETHIPGSPFKIRVGGGGAHPEKVKAYGPGLSSGHAGKSAEFT 3098


>SB_31904| Best HMM Match : Extensin_2 (HMM E-Value=0.5)
          Length = 398

 Score = 27.9 bits (59), Expect = 8.5
 Identities = 14/35 (40%), Positives = 19/35 (54%)
 Frame = -2

Query: 255 DIFATPSSQPRITSDFPILNLKGLPRSRDESNFLP 151
           D+ +T  SQP+I S   +    G+PR R  SN  P
Sbjct: 214 DVSSTKRSQPKIGSSALLPKSFGVPRDRSPSNEKP 248


>SB_10820| Best HMM Match : Sulfotransfer_1 (HMM E-Value=0)
          Length = 922

 Score = 27.9 bits (59), Expect = 8.5
 Identities = 11/25 (44%), Positives = 15/25 (60%)
 Frame = +2

Query: 92  STYPKSGQTVVVHYTGTLTNGKKFD 166
           + YPKSGQT  +     + NG +FD
Sbjct: 36  TAYPKSGQTWTIEIVKQVLNGGEFD 60


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,121,228
Number of Sequences: 59808
Number of extensions: 434999
Number of successful extensions: 863
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 798
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 862
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1853669818
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)