Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0848
         (706 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ288391-1|ABC41341.1|  630|Apis mellifera vasa protein protein.       25   0.92 
AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precurso...    24   1.6  
DQ257416-1|ABB81847.1|  552|Apis mellifera yellow-h protein.           23   2.8  
AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced prot...    23   2.8  
DQ667193-1|ABG75745.1|  510|Apis mellifera cys-loop ligand-gated...    23   3.7  
AB022908-1|BAA86909.1|  493|Apis mellifera amylase protein.            23   3.7  
AY661557-1|AAT74557.1|  411|Apis mellifera yellow-f-like protein...    22   4.9  
AF000632-1|AAC61894.1|  452|Apis mellifera major royal jelly pro...    22   4.9  
EF625897-1|ABR45904.1|  684|Apis mellifera hexamerin protein.          21   8.6  
EF591128-1|ABQ59246.1|  684|Apis mellifera hexamerin 70a protein.      21   8.6  

>DQ288391-1|ABC41341.1|  630|Apis mellifera vasa protein protein.
          Length = 630

 Score = 24.6 bits (51), Expect = 0.92
 Identities = 13/41 (31%), Positives = 20/41 (48%)
 Frame = +2

Query: 32  REIHCK*WVLLLKLSVQGDESTYPKSGQTVVVHYTGTLTNG 154
           RE+  + W  ++K S+     T    G T V+H  G L+ G
Sbjct: 283 RELTIQIWQQIVKFSLNSILKTVVAYGGTSVMHQRGKLSAG 323


>AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precursor
            protein.
          Length = 1770

 Score = 23.8 bits (49), Expect = 1.6
 Identities = 12/28 (42%), Positives = 14/28 (50%)
 Frame = +2

Query: 260  GERAKLTCSPDYAYGQQGHPGVIPPNST 343
            GER  L  S DY Y  +G  G    +ST
Sbjct: 1579 GERVMLKASEDYRYSVRGLCGNFDHDST 1606


>DQ257416-1|ABB81847.1|  552|Apis mellifera yellow-h protein.
          Length = 552

 Score = 23.0 bits (47), Expect = 2.8
 Identities = 11/31 (35%), Positives = 14/31 (45%)
 Frame = +2

Query: 197 FRIGKSEVIRGWDEGVAKMSVGERAKLTCSP 289
           FRI   E  R W     K+ + +  KL C P
Sbjct: 249 FRIQVDECDRLWILDSGKVDIAKGGKLACPP 279


>AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced protein
           75 protein.
          Length = 900

 Score = 23.0 bits (47), Expect = 2.8
 Identities = 15/62 (24%), Positives = 26/62 (41%)
 Frame = -2

Query: 384 CIYSRRRSSTSKISVELGGMTPGWPC*P*A*SGEQVNLARSPTDIFATPSSQPRITSDFP 205
           C   R+  S S   +E G   P  P           + + +PT + ++P S+ +   D P
Sbjct: 568 CPRFRKLDSPSDSGIESGTEKPDKPA--------SSSASSAPTSVCSSPRSEDKEVEDMP 619

Query: 204 IL 199
           +L
Sbjct: 620 VL 621


>DQ667193-1|ABG75745.1|  510|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 510

 Score = 22.6 bits (46), Expect = 3.7
 Identities = 9/18 (50%), Positives = 13/18 (72%)
 Frame = +1

Query: 58  VTVETISPGRRVDLPQIR 111
           +T+ TIS   R DLP++R
Sbjct: 285 LTLSTISLDSRTDLPKVR 302


>AB022908-1|BAA86909.1|  493|Apis mellifera amylase protein.
          Length = 493

 Score = 22.6 bits (46), Expect = 3.7
 Identities = 9/26 (34%), Positives = 15/26 (57%)
 Frame = -1

Query: 670 NYNDKMLLRNVSVVR*NRIDDLQNFI 593
           NYND   +RN  +V  + +D  Q ++
Sbjct: 160 NYNDPSNVRNCELVGLHDLDQSQEYV 185


>AY661557-1|AAT74557.1|  411|Apis mellifera yellow-f-like protein
           protein.
          Length = 411

 Score = 22.2 bits (45), Expect = 4.9
 Identities = 7/26 (26%), Positives = 18/26 (69%)
 Frame = -2

Query: 681 YCDEITMTKCS*GM*VLSDKIESMIF 604
           +C+++++ + +  M VLSD  + ++F
Sbjct: 347 FCNDLSIDRSTNTMYVLSDNFQQLLF 372


>AF000632-1|AAC61894.1|  452|Apis mellifera major royal jelly
           protein MRJP2 protein.
          Length = 452

 Score = 22.2 bits (45), Expect = 4.9
 Identities = 10/22 (45%), Positives = 14/22 (63%)
 Frame = -1

Query: 664 NDKMLLRNVSVVR*NRIDDLQN 599
           N K L+RN   V  N+ D++QN
Sbjct: 404 NVKELIRNTHCVNNNQNDNIQN 425


>EF625897-1|ABR45904.1|  684|Apis mellifera hexamerin protein.
          Length = 684

 Score = 21.4 bits (43), Expect = 8.6
 Identities = 9/30 (30%), Positives = 14/30 (46%)
 Frame = +2

Query: 116 TVVVHYTGTLTNGKKFDSSRDRGKPFKFRI 205
           T    +  T+ NG   +  R+  KPF  +I
Sbjct: 461 TYFEQFDTTINNGLLLEEQRNDDKPFLIKI 490


>EF591128-1|ABQ59246.1|  684|Apis mellifera hexamerin 70a protein.
          Length = 684

 Score = 21.4 bits (43), Expect = 8.6
 Identities = 9/30 (30%), Positives = 14/30 (46%)
 Frame = +2

Query: 116 TVVVHYTGTLTNGKKFDSSRDRGKPFKFRI 205
           T    +  T+ NG   +  R+  KPF  +I
Sbjct: 461 TYFEQFDTTINNGLLLEEQRNDDKPFLIKI 490


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 200,051
Number of Sequences: 438
Number of extensions: 4328
Number of successful extensions: 13
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 21683070
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)