Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0846
         (630 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1687.09 |||conserved fungal protein|Schizosaccharomyces pomb...    29   0.73 
SPCC364.04c |||CASP family protein|Schizosaccharomyces pombe|chr...    28   0.97 
SPCC13B11.02c |||sequence orphan|Schizosaccharomyces pombe|chr 3...    28   1.3  
SPCC584.15c |||arrestin/PY protein 2|Schizosaccharomyces pombe|c...    26   3.9  
SPCC4B3.03c |||DUF21 domain protein|Schizosaccharomyces pombe|ch...    26   5.2  
SPBC1683.07 |mal1||alpha-glucosidase Mal1 |Schizosaccharomyces p...    25   6.8  
SPAC1B3.02c |||transcription elongation factor, Elf1 family|Schi...    25   9.0  
SPBC2A9.04c |||sir antagonist ortholog |Schizosaccharomyces pomb...    25   9.0  

>SPAC1687.09 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1379

 Score = 28.7 bits (61), Expect = 0.73
 Identities = 16/47 (34%), Positives = 22/47 (46%)
 Frame = +1

Query: 277 RIPYGIP*ETALPIRRGSGRT*SQRASMTSCSRPPSNWQSYCDTHPP 417
           ++PY     + LPI        SQ+    S S+  SN    CD+HPP
Sbjct: 519 QLPYFHQSSSELPISASKRAALSQQTE--SASKSSSNISEMCDSHPP 563


>SPCC364.04c |||CASP family protein|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 633

 Score = 28.3 bits (60), Expect = 0.97
 Identities = 17/51 (33%), Positives = 28/51 (54%), Gaps = 1/51 (1%)
 Frame = -1

Query: 150 SILPTN*ALVPVYTRP-DRFRRADVTKYTTADGSVGRLSLFSFVLERVKRT 1
           S+  T  A+V V  +  DRFRRA+VT       +  +++L    LE V+++
Sbjct: 475 SVNETGSAIVDVIKQQRDRFRRANVTLVNQVSAANDKIALLESKLEEVEKS 525


>SPCC13B11.02c |||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 138

 Score = 27.9 bits (59), Expect = 1.3
 Identities = 12/26 (46%), Positives = 15/26 (57%)
 Frame = +1

Query: 148 RVWECHALSVKVARRSVSGTRHVPHL 225
           R W CH  ++K+ RRS    RH  HL
Sbjct: 18  RRW-CHECTIKIFRRSFDIARHTVHL 42


>SPCC584.15c |||arrestin/PY protein 2|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 594

 Score = 26.2 bits (55), Expect = 3.9
 Identities = 10/31 (32%), Positives = 16/31 (51%)
 Frame = +3

Query: 216 TTLGIPEADDPWKKIVEASPPDSIWHSLRNC 308
           T  G+P  DD W+  +    PDS+    ++C
Sbjct: 255 TIPGLPMVDDYWQDQIMVKIPDSLGECTQDC 285


>SPCC4B3.03c |||DUF21 domain protein|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 679

 Score = 25.8 bits (54), Expect = 5.2
 Identities = 16/51 (31%), Positives = 27/51 (52%), Gaps = 1/51 (1%)
 Frame = +2

Query: 17  SKTKENNDNRPTEPSAVVYFVTSARRKRSGLV*TGTSAQFVG-RIEYGSVM 166
           SKT ENN N+ +E +         ++  SG + + +S  F G R+  G+V+
Sbjct: 544 SKTTENNGNQQSERTE----SADGKKDNSGSISSNSSKTFTGKRVRLGNVI 590


>SPBC1683.07 |mal1||alpha-glucosidase Mal1 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 579

 Score = 25.4 bits (53), Expect = 6.8
 Identities = 8/11 (72%), Positives = 10/11 (90%)
 Frame = +1

Query: 376 PPSNWQSYCDT 408
           PP+NW+SY DT
Sbjct: 149 PPNNWRSYFDT 159


>SPAC1B3.02c |||transcription elongation factor, Elf1
           family|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 107

 Score = 25.0 bits (52), Expect = 9.0
 Identities = 17/57 (29%), Positives = 27/57 (47%), Gaps = 4/57 (7%)
 Frame = +1

Query: 25  KRKQR*PPNRTVSSCIFCD----VGAAEAVRSRINWNKRSICGENRVWECHALSVKV 183
           K K+R PP  T  +C+FC+    V  +   +S +      ICG++      ALS  +
Sbjct: 11  KPKRRAPPLDTTFTCLFCNHEKSVSCSLDKQSGVGNLHCKICGQSHQCLITALSAPI 67


>SPBC2A9.04c |||sir antagonist ortholog |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 741

 Score = 25.0 bits (52), Expect = 9.0
 Identities = 11/45 (24%), Positives = 23/45 (51%)
 Frame = -3

Query: 289 HMESGGEASTIFFHGSSASGIPSVVHAAYQIRSAEQP*RSGHDTP 155
           H   G + +T     ++++G+ S  H + ++ +A    R+G D P
Sbjct: 173 HTLRGNQGNTAVSQENASNGVHSDFHPSEELNNANTDGRTGVDEP 217


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,410,197
Number of Sequences: 5004
Number of extensions: 48903
Number of successful extensions: 134
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 132
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 134
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 279695522
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)