Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brS-0846
(630 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_05_1166 - 34633770-34634301,34634559-34635181,34635279-34637216 32 0.33
06_01_0183 + 1422798-1422829,1422989-1423239,1423669-1423945,142... 29 2.3
12_01_0346 + 2652181-2653566 29 4.0
04_01_0100 + 1034057-1034308,1034962-1035078,1035152-1035382,103... 28 7.0
11_03_0196 - 11490624-11490923,11493561-11493599,11494091-11494897 27 9.3
11_03_0185 - 11329594-11329890,11330873-11331598 27 9.3
09_04_0486 + 18012886-18012997,18013098-18013374,18013510-18013516 27 9.3
05_04_0299 - 19958776-19958858,19958883-19959012,19960131-199601... 27 9.3
03_02_0085 - 5539188-5539388,5539576-5539714,5540108-5540279,554... 27 9.3
>02_05_1166 - 34633770-34634301,34634559-34635181,34635279-34637216
Length = 1030
Score = 32.3 bits (70), Expect = 0.33
Identities = 16/48 (33%), Positives = 30/48 (62%)
Frame = +2
Query: 26 KENNDNRPTEPSAVVYFVTSARRKRSGLV*TGTSAQFVGRIEYGSVMP 169
KEN+ ++P++P+A V + TS+ + S + + S++ V + SVMP
Sbjct: 43 KENSASKPSKPTAAVRWSTSSIPRASRIPSSVESSKLVSTLRASSVMP 90
>06_01_0183 +
1422798-1422829,1422989-1423239,1423669-1423945,
1424827-1425034,1425129-1425203,1425301-1425375,
1425494-1425574,1425666-1425740,1425829-1426002,
1426105-1426134
Length = 425
Score = 29.5 bits (63), Expect = 2.3
Identities = 15/43 (34%), Positives = 25/43 (58%)
Frame = -2
Query: 152 TRFSPQIERLFQFIRDLTASAAPTSQNIQLLTVLLGGYRCFLL 24
T + ++ RLF+F+ DL A +P ++ L +LLG + LL
Sbjct: 245 TSLARKVFRLFKFVNDLHALISPPAKGTPLPLILLGKSKNALL 287
>12_01_0346 + 2652181-2653566
Length = 461
Score = 28.7 bits (61), Expect = 4.0
Identities = 17/65 (26%), Positives = 26/65 (40%)
Frame = +3
Query: 276 PDSIWHSLRNCVAYQAGVWQNLITKGIDDVMQPAAFKLAIVLRHTPTEDCAKLMSELLKT 455
P + H L +A G + + D+ P F+L I T D L+ E K
Sbjct: 36 PPRVPHRLGTVIAVDLGNTNSCVAGYGDEADAPPLFRLCIPTSVAFTGDGDALVGEAAKN 95
Query: 456 HPVSV 470
HP ++
Sbjct: 96 HPAAI 100
>04_01_0100 +
1034057-1034308,1034962-1035078,1035152-1035382,
1038200-1038455,1038551-1038807,1038978-1039250,
1039617-1039898,1040045-1040165,1040351-1040520,
1040613-1040711
Length = 685
Score = 27.9 bits (59), Expect = 7.0
Identities = 9/28 (32%), Positives = 15/28 (53%)
Frame = +1
Query: 64 SCIFCDVGAAEAVRSRINWNKRSICGEN 147
+C + VG + + R+NW S CG +
Sbjct: 612 TCRYIPVGLLDVIPQRLNWRPPSYCGRD 639
>11_03_0196 - 11490624-11490923,11493561-11493599,11494091-11494897
Length = 381
Score = 27.5 bits (58), Expect = 9.3
Identities = 17/86 (19%), Positives = 39/86 (45%)
Frame = +3
Query: 204 YAACTTLGIPEADDPWKKIVEASPPDSIWHSLRNCVAYQAGVWQNLITKGIDDVMQPAAF 383
+ CT L +P K+++ +P D + + + + + Q ++ K +
Sbjct: 228 HVKCTVLDLP-------KVIDKAPNDGVVNYVAGDLFHTVPPAQAVMLKRFCYTLSSREM 280
Query: 384 KLAIVLRHTPTEDCAKLMSELLKTHP 461
+++VL H +DC K++++ K P
Sbjct: 281 -ISLVLHHWSDDDCVKILTQCRKAIP 305
>11_03_0185 - 11329594-11329890,11330873-11331598
Length = 340
Score = 27.5 bits (58), Expect = 9.3
Identities = 14/43 (32%), Positives = 22/43 (51%), Gaps = 1/43 (2%)
Frame = +3
Query: 336 NLITKGIDDVMQPA-AFKLAIVLRHTPTEDCAKLMSELLKTHP 461
N + + + PA A L +VL H EDC K++++ K P
Sbjct: 223 NYVAGDMFRAIPPAQAVMLKLVLHHWSDEDCVKILTQCKKAIP 265
>09_04_0486 + 18012886-18012997,18013098-18013374,18013510-18013516
Length = 131
Score = 27.5 bits (58), Expect = 9.3
Identities = 15/40 (37%), Positives = 19/40 (47%), Gaps = 1/40 (2%)
Frame = +1
Query: 46 PNRTVSSCI-FCDVGAAEAVRSRINWNKRSICGENRVWEC 162
P T S+C F D G A S + WN + CG+ V C
Sbjct: 34 PPYTPSACYGFEDQGTMIAAASDVFWNGGAACGQQYVVTC 73
>05_04_0299 -
19958776-19958858,19958883-19959012,19960131-19960175,
19960252-19960370,19960450-19960543,19961824-19961985,
19962117-19962266,19962472-19962537,19962934-19962981,
19963654-19963866,19963953-19964078,19964155-19964232,
19964600-19964671,19965522-19965953,19966863-19966925,
19967497-19967898
Length = 760
Score = 27.5 bits (58), Expect = 9.3
Identities = 13/39 (33%), Positives = 18/39 (46%)
Frame = +3
Query: 162 SCPERQGCSAERIWYAACTTLGIPEADDPWKKIVEASPP 278
+ PE +G + Y + L +P DDP K SPP
Sbjct: 85 AAPE-EGSAGREAGYWRLSKLAVPARDDPGKDFAGVSPP 122
>03_02_0085 -
5539188-5539388,5539576-5539714,5540108-5540279,
5541119-5541165,5541450-5541527,5542113-5542177,
5543108-5543155,5543393-5543473,5543586-5543783
Length = 342
Score = 27.5 bits (58), Expect = 9.3
Identities = 11/26 (42%), Positives = 18/26 (69%)
Frame = +3
Query: 387 LAIVLRHTPTEDCAKLMSELLKTHPV 464
+AI+ R P ++CA+ E+LK +PV
Sbjct: 110 MAIISRLYPCKECAEHFKEVLKANPV 135
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,616,633
Number of Sequences: 37544
Number of extensions: 391888
Number of successful extensions: 1114
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1087
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1113
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1537558360
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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