Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0846
         (630 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_7008| Best HMM Match : No HMM Matches (HMM E-Value=.)               27   9.5  
SB_50114| Best HMM Match : DUF1168 (HMM E-Value=1.7)                   27   9.5  
SB_20239| Best HMM Match : RanGAP1_C (HMM E-Value=3)                   27   9.5  
SB_1922| Best HMM Match : No HMM Matches (HMM E-Value=.)               27   9.5  

>SB_7008| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 309

 Score = 27.5 bits (58), Expect = 9.5
 Identities = 13/30 (43%), Positives = 18/30 (60%)
 Frame = -3

Query: 487 DVSSSCTDTGCVFRSSDINLAQSSVGVCRS 398
           D +S  T TG +  SSD+ LAQ S  + R+
Sbjct: 182 DTASIATQTGSIGESSDLILAQRSSALART 211


>SB_50114| Best HMM Match : DUF1168 (HMM E-Value=1.7)
          Length = 269

 Score = 27.5 bits (58), Expect = 9.5
 Identities = 11/34 (32%), Positives = 17/34 (50%)
 Frame = +3

Query: 189 AERIWYAACTTLGIPEADDPWKKIVEASPPDSIW 290
           AE   Y+ C   G PE   P+ K +  + P ++W
Sbjct: 179 AEESSYSPCQEQGHPEVSKPFLKSLPDATPGAVW 212


>SB_20239| Best HMM Match : RanGAP1_C (HMM E-Value=3)
          Length = 346

 Score = 27.5 bits (58), Expect = 9.5
 Identities = 15/48 (31%), Positives = 22/48 (45%)
 Frame = -3

Query: 250 HGSSASGIPSVVHAAYQIRSAEQP*RSGHDTPILDSPHKLSACSSLYE 107
           HG  + G   V    YQ R   +  R GH T ++D   K+   + LY+
Sbjct: 165 HGRHSRGKQGVTKGLYQ-RKTNKDDRVGHITSLVDFKPKMHRIAKLYQ 211


>SB_1922| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 72

 Score = 27.5 bits (58), Expect = 9.5
 Identities = 11/21 (52%), Positives = 14/21 (66%)
 Frame = -3

Query: 175 RSGHDTPILDSPHKLSACSSL 113
           R  HDTPI+D P  ++ CS L
Sbjct: 29  RCTHDTPIVDGPIVITNCSPL 49


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,366,413
Number of Sequences: 59808
Number of extensions: 416220
Number of successful extensions: 993
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 914
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 989
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1572561250
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)