Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0846
         (630 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

X54251-1|CAA38152.1| 1596|Drosophila melanogaster nuclear protei...    29   5.2  
BT023751-1|AAZ41759.1| 1594|Drosophila melanogaster RH56202p pro...    29   5.2  
AY061127-1|AAL28675.1|  509|Drosophila melanogaster LD11031p pro...    29   5.2  
AE013599-3956|AAF47272.2|  509|Drosophila melanogaster CG3589-PA...    29   5.2  
AE013599-1817|AAF58300.2| 1594|Drosophila melanogaster CG8118-PB...    29   5.2  
AE013599-1816|AAF58299.1| 1594|Drosophila melanogaster CG8118-PA...    29   5.2  
AE014134-759|AAF50995.3| 1118|Drosophila melanogaster CG15635-PA...    29   6.9  
BT015295-1|AAT94524.1| 1300|Drosophila melanogaster GH02989p pro...    28   9.1  
AE014298-3191|AAN09573.1| 1342|Drosophila melanogaster CG14616-P...    28   9.1  
AE014298-3190|AAN09570.2| 1360|Drosophila melanogaster CG14616-P...    28   9.1  
AE014298-3189|AAN09571.1| 1355|Drosophila melanogaster CG14616-P...    28   9.1  
AE014298-3188|AAN09569.1| 1751|Drosophila melanogaster CG14616-P...    28   9.1  

>X54251-1|CAA38152.1| 1596|Drosophila melanogaster nuclear protein
            protein.
          Length = 1596

 Score = 29.1 bits (62), Expect = 5.2
 Identities = 16/54 (29%), Positives = 27/54 (50%)
 Frame = +3

Query: 21   KQKKTTITAQQNRQQLYIL*RRRGGSGQVSYKLEQALNLWGESSMGVSCPERQG 182
            +Q+ TT T Q  + Q   + ++ GG+  +     Q L+L G+    VS   +QG
Sbjct: 894  QQQSTTTTLQMKQTQQLHISQQGGGAQGIQVSAGQHLHLSGDMKSNVSVAAQQG 947


>BT023751-1|AAZ41759.1| 1594|Drosophila melanogaster RH56202p protein.
          Length = 1594

 Score = 29.1 bits (62), Expect = 5.2
 Identities = 16/54 (29%), Positives = 27/54 (50%)
 Frame = +3

Query: 21   KQKKTTITAQQNRQQLYIL*RRRGGSGQVSYKLEQALNLWGESSMGVSCPERQG 182
            +Q+ TT T Q  + Q   + ++ GG+  +     Q L+L G+    VS   +QG
Sbjct: 893  QQQSTTTTLQMKQTQQLHISQQGGGAHGIQVSAGQHLHLSGDMKSNVSVAAQQG 946


>AY061127-1|AAL28675.1|  509|Drosophila melanogaster LD11031p
           protein.
          Length = 509

 Score = 29.1 bits (62), Expect = 5.2
 Identities = 16/52 (30%), Positives = 26/52 (50%), Gaps = 1/52 (1%)
 Frame = -2

Query: 365 DVIDALCDQVLPDPRLIGNAV-S*GMPYGIRW*SFYDFLPWVVRFRYSKCGT 213
           DV +  C ++   P  +G  V + G PY + +   +DF P + + R  KC T
Sbjct: 366 DVPEQCCVRLARSPATVGQMVYNAGFPYYVNFSFRHDFNPSIFQGRVIKCDT 417


>AE013599-3956|AAF47272.2|  509|Drosophila melanogaster CG3589-PA
           protein.
          Length = 509

 Score = 29.1 bits (62), Expect = 5.2
 Identities = 16/52 (30%), Positives = 26/52 (50%), Gaps = 1/52 (1%)
 Frame = -2

Query: 365 DVIDALCDQVLPDPRLIGNAV-S*GMPYGIRW*SFYDFLPWVVRFRYSKCGT 213
           DV +  C ++   P  +G  V + G PY + +   +DF P + + R  KC T
Sbjct: 366 DVPEQCCVRLARSPATVGQMVYNAGFPYYVNFSFRHDFNPSIFQGRVIKCDT 417


>AE013599-1817|AAF58300.2| 1594|Drosophila melanogaster CG8118-PB,
            isoform B protein.
          Length = 1594

 Score = 29.1 bits (62), Expect = 5.2
 Identities = 16/54 (29%), Positives = 27/54 (50%)
 Frame = +3

Query: 21   KQKKTTITAQQNRQQLYIL*RRRGGSGQVSYKLEQALNLWGESSMGVSCPERQG 182
            +Q+ TT T Q  + Q   + ++ GG+  +     Q L+L G+    VS   +QG
Sbjct: 893  QQQSTTTTLQMKQTQQLHISQQGGGAHGIQVSAGQHLHLSGDMKSNVSVAAQQG 946


>AE013599-1816|AAF58299.1| 1594|Drosophila melanogaster CG8118-PA,
            isoform A protein.
          Length = 1594

 Score = 29.1 bits (62), Expect = 5.2
 Identities = 16/54 (29%), Positives = 27/54 (50%)
 Frame = +3

Query: 21   KQKKTTITAQQNRQQLYIL*RRRGGSGQVSYKLEQALNLWGESSMGVSCPERQG 182
            +Q+ TT T Q  + Q   + ++ GG+  +     Q L+L G+    VS   +QG
Sbjct: 893  QQQSTTTTLQMKQTQQLHISQQGGGAHGIQVSAGQHLHLSGDMKSNVSVAAQQG 946


>AE014134-759|AAF50995.3| 1118|Drosophila melanogaster CG15635-PA
           protein.
          Length = 1118

 Score = 28.7 bits (61), Expect = 6.9
 Identities = 15/33 (45%), Positives = 17/33 (51%)
 Frame = -1

Query: 216 YMPRTRYAPPSNLDAQGMTLPYSILPTN*ALVP 118
           Y P T + PPS    QG   P S+LP N  L P
Sbjct: 580 YPPSTGWTPPSGPLTQGGHPPGSLLPPNTGLPP 612



 Score = 28.3 bits (60), Expect = 9.1
 Identities = 15/33 (45%), Positives = 17/33 (51%)
 Frame = -1

Query: 216 YMPRTRYAPPSNLDAQGMTLPYSILPTN*ALVP 118
           Y P T + PPS    QG   P S+LP N  L P
Sbjct: 816 YPPSTGWIPPSGPLTQGGHPPGSLLPPNTGLPP 848


>BT015295-1|AAT94524.1| 1300|Drosophila melanogaster GH02989p
           protein.
          Length = 1300

 Score = 28.3 bits (60), Expect = 9.1
 Identities = 16/52 (30%), Positives = 23/52 (44%)
 Frame = -1

Query: 198 YAPPSNLDAQGMTLPYSILPTN*ALVPVYTRPDRFRRADVTKYTTADGSVGR 43
           Y+P S +   G  +    +PT+   V VYT    +  A+  K    DG V R
Sbjct: 245 YSPESRVRKTGSFIYEDFMPTDGTDVKVYTVGPDYAHAEARKSPALDGKVER 296


>AE014298-3191|AAN09573.1| 1342|Drosophila melanogaster CG14616-PE,
           isoform E protein.
          Length = 1342

 Score = 28.3 bits (60), Expect = 9.1
 Identities = 16/52 (30%), Positives = 23/52 (44%)
 Frame = -1

Query: 198 YAPPSNLDAQGMTLPYSILPTN*ALVPVYTRPDRFRRADVTKYTTADGSVGR 43
           Y+P S +   G  +    +PT+   V VYT    +  A+  K    DG V R
Sbjct: 245 YSPESRVRKTGSFIYEDFMPTDGTDVKVYTVGPDYAHAEARKSPALDGKVER 296


>AE014298-3190|AAN09570.2| 1360|Drosophila melanogaster CG14616-PA,
           isoform A protein.
          Length = 1360

 Score = 28.3 bits (60), Expect = 9.1
 Identities = 16/52 (30%), Positives = 23/52 (44%)
 Frame = -1

Query: 198 YAPPSNLDAQGMTLPYSILPTN*ALVPVYTRPDRFRRADVTKYTTADGSVGR 43
           Y+P S +   G  +    +PT+   V VYT    +  A+  K    DG V R
Sbjct: 245 YSPESRVRKTGSFIYEDFMPTDGTDVKVYTVGPDYAHAEARKSPALDGKVER 296


>AE014298-3189|AAN09571.1| 1355|Drosophila melanogaster CG14616-PD,
           isoform D protein.
          Length = 1355

 Score = 28.3 bits (60), Expect = 9.1
 Identities = 16/52 (30%), Positives = 23/52 (44%)
 Frame = -1

Query: 198 YAPPSNLDAQGMTLPYSILPTN*ALVPVYTRPDRFRRADVTKYTTADGSVGR 43
           Y+P S +   G  +    +PT+   V VYT    +  A+  K    DG V R
Sbjct: 245 YSPESRVRKTGSFIYEDFMPTDGTDVKVYTVGPDYAHAEARKSPALDGKVER 296


>AE014298-3188|AAN09569.1| 1751|Drosophila melanogaster CG14616-PC,
           isoform C protein.
          Length = 1751

 Score = 28.3 bits (60), Expect = 9.1
 Identities = 16/52 (30%), Positives = 23/52 (44%)
 Frame = -1

Query: 198 YAPPSNLDAQGMTLPYSILPTN*ALVPVYTRPDRFRRADVTKYTTADGSVGR 43
           Y+P S +   G  +    +PT+   V VYT    +  A+  K    DG V R
Sbjct: 245 YSPESRVRKTGSFIYEDFMPTDGTDVKVYTVGPDYAHAEARKSPALDGKVER 296


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 28,233,511
Number of Sequences: 53049
Number of extensions: 620979
Number of successful extensions: 1824
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 1774
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1824
length of database: 24,988,368
effective HSP length: 82
effective length of database: 20,638,350
effective search space used: 2621070450
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)