Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0846
         (630 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC006633-2|AAK68372.1|  321|Caenorhabditis elegans Hypothetical ...    29   2.1  
U80023-12|AAY86287.1|  564|Caenorhabditis elegans Hypothetical p...    29   2.7  
U00043-6|AAC77507.1|  487|Caenorhabditis elegans Hypothetical pr...    29   2.7  
Z66511-6|CAA91318.1|  343|Caenorhabditis elegans Hypothetical pr...    29   3.6  

>AC006633-2|AAK68372.1|  321|Caenorhabditis elegans Hypothetical
           protein F35B3.1 protein.
          Length = 321

 Score = 29.5 bits (63), Expect = 2.1
 Identities = 14/27 (51%), Positives = 19/27 (70%), Gaps = 1/27 (3%)
 Frame = +2

Query: 29  ENNDNRPTEP-SAVVYFVTSARRKRSG 106
           E N NRPTEP ++V YF    R++R+G
Sbjct: 293 EQNINRPTEPANSVPYFAFYYRQRRAG 319


>U80023-12|AAY86287.1|  564|Caenorhabditis elegans Hypothetical
           protein F07C4.12b protein.
          Length = 564

 Score = 29.1 bits (62), Expect = 2.7
 Identities = 19/58 (32%), Positives = 27/58 (46%), Gaps = 6/58 (10%)
 Frame = +3

Query: 222 LGIPEADDPWKKIVEASP-PDSIWHSLRNCVAY-----QAGVWQNLITKGIDDVMQPA 377
           LGIP A  P  ++    P P +IW   RNC  Y     Q+G +  +I    +D+   A
Sbjct: 40  LGIPYAKPPVGELRFKKPVPAAIWTETRNCTKYGPRCPQSGAFPEMINFQKEDIPDEA 97


>U00043-6|AAC77507.1|  487|Caenorhabditis elegans Hypothetical
           protein T26A5.4 protein.
          Length = 487

 Score = 29.1 bits (62), Expect = 2.7
 Identities = 19/56 (33%), Positives = 24/56 (42%)
 Frame = +3

Query: 246 PWKKIVEASPPDSIWHSLRNCVAYQAGVWQNLITKGIDDVMQPAAFKLAIVLRHTP 413
           P  KIV   PP     SL   V     ++ N IT  +    Q +AF L I+L   P
Sbjct: 61  PRIKIVGIPPPPDFMDSLPAFVQLPLKLFWNFITLFLALAFQTSAFNLRIILMQNP 116


>Z66511-6|CAA91318.1|  343|Caenorhabditis elegans Hypothetical
           protein F07A11.5 protein.
          Length = 343

 Score = 28.7 bits (61), Expect = 3.6
 Identities = 19/70 (27%), Positives = 30/70 (42%), Gaps = 2/70 (2%)
 Frame = +3

Query: 339 LITKGIDDVMQPAAFKLAIVLRHTPTED--CAKLMSELLKTHPVSVQEELTSYCVSLLTD 512
           L +KG+DDV   A  K+  V   T   D  C  L + L+  HP+S      +   +L   
Sbjct: 262 LASKGVDDVEHTAVIKVDAV-DTTGAGDCFCGSLAAHLVAGHPISASIRSAANLAALSVT 320

Query: 513 DEARRCACWQ 542
               + + W+
Sbjct: 321 RHGTQSSYWK 330


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,926,410
Number of Sequences: 27780
Number of extensions: 296853
Number of successful extensions: 777
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 752
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 777
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1385109898
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)