Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brS-0846
(630 letters)
Database: bee
438 sequences; 146,343 total letters
Searching......................................................done
Score E
Sequences producing significant alignments: (bits) Value
EF117814-1|ABO38437.1| 570|Apis mellifera cryptochrome 2 protein. 23 2.4
DQ667181-1|ABG75733.1| 445|Apis mellifera GABA-gated chloride c... 23 3.2
AF134821-1|AAD40236.1| 226|Apis mellifera hexamerin protein. 22 4.3
L10430-1|AAA27731.1| 150|Apis mellifera transposase protein. 22 5.7
AY338499-1|AAR08420.1| 500|Apis mellifera Kruppel-like protein ... 22 5.7
AY155490-1|AAO12861.1| 342|Apis mellifera Ammar1 transposase pr... 22 5.7
AF004169-1|AAC13418.1| 371|Apis mellifera ultraviolet-sensitive... 22 5.7
DQ667192-1|ABG75744.1| 489|Apis mellifera pH-sensitive chloride... 21 7.5
DQ667191-1|ABG75743.1| 475|Apis mellifera pH-sensitive chloride... 21 7.5
DQ667190-1|ABG75742.1| 509|Apis mellifera pH-sensitive chloride... 21 7.5
DQ667189-1|ABG75741.1| 458|Apis mellifera pH-sensitive chloride... 21 7.5
AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamat... 21 9.9
>EF117814-1|ABO38437.1| 570|Apis mellifera cryptochrome 2 protein.
Length = 570
Score = 23.0 bits (47), Expect = 2.4
Identities = 17/47 (36%), Positives = 24/47 (51%)
Frame = +3
Query: 147 SSMGVSCPERQGCSAERIWYAACTTLGIPEADDPWKKIVEASPPDSI 287
S G+S R GC + R++Y T L +KKI +A PP S+
Sbjct: 265 SQTGLSPYLRFGCLSTRLFYYQLTDL--------YKKIKKAVPPLSL 303
>DQ667181-1|ABG75733.1| 445|Apis mellifera GABA-gated chloride
channel protein.
Length = 445
Score = 22.6 bits (46), Expect = 3.2
Identities = 9/15 (60%), Positives = 10/15 (66%)
Frame = +2
Query: 350 GHR*RHAAGRLQTGN 394
GHR RH+ L TGN
Sbjct: 192 GHRQRHSTIHLSTGN 206
>AF134821-1|AAD40236.1| 226|Apis mellifera hexamerin protein.
Length = 226
Score = 22.2 bits (45), Expect = 4.3
Identities = 7/10 (70%), Positives = 8/10 (80%)
Frame = +2
Query: 575 ATCCSTGTWS 604
ATCC+T WS
Sbjct: 198 ATCCTTXWWS 207
>L10430-1|AAA27731.1| 150|Apis mellifera transposase protein.
Length = 150
Score = 21.8 bits (44), Expect = 5.7
Identities = 6/13 (46%), Positives = 11/13 (84%)
Frame = +1
Query: 43 PPNRTVSSCIFCD 81
PPNRT++S ++ +
Sbjct: 85 PPNRTINSVVYIE 97
>AY338499-1|AAR08420.1| 500|Apis mellifera Kruppel-like protein 1
protein.
Length = 500
Score = 21.8 bits (44), Expect = 5.7
Identities = 11/25 (44%), Positives = 14/25 (56%)
Frame = -3
Query: 145 SPHKLSACSSLYET*PLPPRRRHKI 71
SP L + ET LPPR+R K+
Sbjct: 448 SPDPLDLAIPVRETLILPPRKRCKM 472
>AY155490-1|AAO12861.1| 342|Apis mellifera Ammar1 transposase
protein.
Length = 342
Score = 21.8 bits (44), Expect = 5.7
Identities = 6/13 (46%), Positives = 11/13 (84%)
Frame = +1
Query: 43 PPNRTVSSCIFCD 81
PPNRT++S ++ +
Sbjct: 206 PPNRTINSVVYIE 218
>AF004169-1|AAC13418.1| 371|Apis mellifera ultraviolet-sensitive
opsin protein.
Length = 371
Score = 21.8 bits (44), Expect = 5.7
Identities = 9/22 (40%), Positives = 14/22 (63%)
Frame = -1
Query: 300 LGNAIWNPVVKLLRFSSMGRPL 235
+G AI N + R+S++ RPL
Sbjct: 132 IGAAITNAAIAYDRYSTIARPL 153
>DQ667192-1|ABG75744.1| 489|Apis mellifera pH-sensitive chloride
channel variant 4 protein.
Length = 489
Score = 21.4 bits (43), Expect = 7.5
Identities = 8/17 (47%), Positives = 10/17 (58%)
Frame = -1
Query: 225 QVWYMPRTRYAPPSNLD 175
Q WY PR RY+ S +
Sbjct: 115 QQWYDPRLRYSNRSQYE 131
>DQ667191-1|ABG75743.1| 475|Apis mellifera pH-sensitive chloride
channel variant 3 protein.
Length = 475
Score = 21.4 bits (43), Expect = 7.5
Identities = 8/17 (47%), Positives = 10/17 (58%)
Frame = -1
Query: 225 QVWYMPRTRYAPPSNLD 175
Q WY PR RY+ S +
Sbjct: 115 QQWYDPRLRYSNRSQYE 131
>DQ667190-1|ABG75742.1| 509|Apis mellifera pH-sensitive chloride
channel variant 1 protein.
Length = 509
Score = 21.4 bits (43), Expect = 7.5
Identities = 8/17 (47%), Positives = 10/17 (58%)
Frame = -1
Query: 225 QVWYMPRTRYAPPSNLD 175
Q WY PR RY+ S +
Sbjct: 166 QQWYDPRLRYSNRSQYE 182
>DQ667189-1|ABG75741.1| 458|Apis mellifera pH-sensitive chloride
channel protein.
Length = 458
Score = 21.4 bits (43), Expect = 7.5
Identities = 8/17 (47%), Positives = 10/17 (58%)
Frame = -1
Query: 225 QVWYMPRTRYAPPSNLD 175
Q WY PR RY+ S +
Sbjct: 115 QQWYDPRLRYSNRSQYE 131
>AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamate
receptor protein.
Length = 1040
Score = 21.0 bits (42), Expect = 9.9
Identities = 11/41 (26%), Positives = 18/41 (43%)
Frame = +3
Query: 423 CAKLMSELLKTHPVSVQEELTSYCVSLLTDDEARRCACWQS 545
C + +L+K V+ + + LLT AR C + S
Sbjct: 310 CIAIKEKLVKDSGVAKDAAYDNIVLKLLTKPRARGCIIFGS 350
Database: bee
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 146,343
Number of sequences in database: 438
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 169,086
Number of Sequences: 438
Number of extensions: 3521
Number of successful extensions: 16
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 16
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 16
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 18826962
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -