Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0846
         (630 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g01820.1 68414.m00101 peroxisomal biogenesis factor 11 family...    30   1.5  
At3g13330.1 68416.m01678 expressed protein                             29   3.4  
At2g45740.2 68415.m05690 peroxisomal biogenesis factor 11 family...    28   5.9  
At2g45740.1 68415.m05689 peroxisomal biogenesis factor 11 family...    28   5.9  
At4g28570.1 68417.m04087 alcohol oxidase-related low similarity ...    27   7.8  
At3g05680.1 68416.m00634 expressed protein                             27   7.8  

>At1g01820.1 68414.m00101 peroxisomal biogenesis factor 11 family
           protein / PEX11 family protein contains Pfam PF05648:
           Peroxisomal biogenesis factor 11 (PEX11)
          Length = 235

 Score = 29.9 bits (64), Expect = 1.5
 Identities = 16/44 (36%), Positives = 25/44 (56%)
 Frame = -2

Query: 155 HTRFSPQIERLFQFIRDLTASAAPTSQNIQLLTVLLGGYRCFLL 24
           +T  + ++ RLF+F+ DL A  +P  +   L  VLLG  +  LL
Sbjct: 52  NTSLARKVFRLFKFVNDLHALISPVPKGTPLPLVLLGKSKNALL 95


>At3g13330.1 68416.m01678 expressed protein
          Length = 1711

 Score = 28.7 bits (61), Expect = 3.4
 Identities = 13/37 (35%), Positives = 20/37 (54%)
 Frame = +3

Query: 405 HTPTEDCAKLMSELLKTHPVSVQEELTSYCVSLLTDD 515
           H PT++  +  +ELL  H  S  ++L S C S +  D
Sbjct: 696 HVPTQEETQFANELLDLHLQSALDDLLSICQSNIHSD 732


>At2g45740.2 68415.m05690 peroxisomal biogenesis factor 11 family
           protein / PEX11 family protein contains Pfam profile
           PF05648: Peroxisomal biogenesis factor 11 (PEX11)
          Length = 236

 Score = 27.9 bits (59), Expect = 5.9
 Identities = 15/43 (34%), Positives = 23/43 (53%)
 Frame = -2

Query: 152 TRFSPQIERLFQFIRDLTASAAPTSQNIQLLTVLLGGYRCFLL 24
           T  + ++ RLF+F+ DL    +P  +   L  VLLG  +  LL
Sbjct: 54  TSLARKVFRLFKFVNDLHGLISPVPKGTPLPLVLLGKSKNALL 96


>At2g45740.1 68415.m05689 peroxisomal biogenesis factor 11 family
           protein / PEX11 family protein contains Pfam profile
           PF05648: Peroxisomal biogenesis factor 11 (PEX11)
          Length = 236

 Score = 27.9 bits (59), Expect = 5.9
 Identities = 15/43 (34%), Positives = 23/43 (53%)
 Frame = -2

Query: 152 TRFSPQIERLFQFIRDLTASAAPTSQNIQLLTVLLGGYRCFLL 24
           T  + ++ RLF+F+ DL    +P  +   L  VLLG  +  LL
Sbjct: 54  TSLARKVFRLFKFVNDLHGLISPVPKGTPLPLVLLGKSKNALL 96


>At4g28570.1 68417.m04087 alcohol oxidase-related low similarity to
           long chain fatty alcohol oxidase from Candida cloacae
           [GI:6983581], Candida tropicalis [GI:6983594]
          Length = 748

 Score = 27.5 bits (58), Expect = 7.8
 Identities = 13/32 (40%), Positives = 16/32 (50%)
 Frame = -3

Query: 370 CMTSSMPFVIKFCQTPA**ATQFLRECHMESG 275
           C+  S PFV+KF Q P       LR    +SG
Sbjct: 108 CLDKSWPFVLKFSQLPLDKREAILRNWSRQSG 139


>At3g05680.1 68416.m00634 expressed protein
          Length = 2057

 Score = 27.5 bits (58), Expect = 7.8
 Identities = 23/58 (39%), Positives = 30/58 (51%), Gaps = 6/58 (10%)
 Frame = -3

Query: 484  VSSSCTDTGCV--FRSSDINLAQSSVGV-C---RSTIASLKAAGCMTSSMPFVIKFCQ 329
            VS+S     C+  FRS  + L  S V + C   +  +ASL A  C     PFV+KFCQ
Sbjct: 1135 VSASSVIQWCIPAFRSISL-LCDSQVPLLCFQKKELLASLSAKDCALI-FPFVLKFCQ 1190


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,268,550
Number of Sequences: 28952
Number of extensions: 285450
Number of successful extensions: 800
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 775
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 800
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1285411824
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)