Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0845
         (650 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF633444-1|ABR32189.1|  721|Tribolium castaneum heat shock prote...    23   2.9  
AF217810-1|AAF71998.1|  431|Tribolium castaneum fork head orthol...    23   2.9  
AM292367-1|CAL23179.2| 1451|Tribolium castaneum gustatory recept...    21   8.8  

>EF633444-1|ABR32189.1|  721|Tribolium castaneum heat shock protein
           90 protein.
          Length = 721

 Score = 22.6 bits (46), Expect = 2.9
 Identities = 19/47 (40%), Positives = 23/47 (48%), Gaps = 4/47 (8%)
 Frame = +2

Query: 137 PNASILMFLNNKNETGKNDA*I---VILEFYFIFLLLSW-VDELTVH 265
           P+ SIL  L  K E  KND  +   VIL F    L   + +DE  VH
Sbjct: 627 PDPSILKNLRQKAEADKNDKAVKDLVILLFETALLSSGFTLDEPQVH 673


>AF217810-1|AAF71998.1|  431|Tribolium castaneum fork head
           orthologue protein.
          Length = 431

 Score = 22.6 bits (46), Expect = 2.9
 Identities = 9/27 (33%), Positives = 14/27 (51%)
 Frame = +3

Query: 69  NFNLIFSHHQFNTCFCFMARLTNRMHP 149
           + N+   HHQ N     ++ + NR HP
Sbjct: 310 DLNMHQQHHQQNMSHEELSAMVNRCHP 336


>AM292367-1|CAL23179.2| 1451|Tribolium castaneum gustatory receptor
           candidate 46 protein.
          Length = 1451

 Score = 21.0 bits (42), Expect = 8.8
 Identities = 7/10 (70%), Positives = 8/10 (80%)
 Frame = -2

Query: 205 HYLRIIFTSF 176
           HYLR+ FT F
Sbjct: 524 HYLRVFFTVF 533


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 157,151
Number of Sequences: 336
Number of extensions: 3390
Number of successful extensions: 8
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 16760905
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)